Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0696
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    47   7e-06
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    46   1e-05
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709...    29   2.0  
10_08_0304 - 16640937-16642877                                         28   3.5  
12_02_0502 - 19746100-19746185,19746745-19750474                       27   4.6  
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848...    27   6.1  
06_02_0235 + 13324961-13324965,13326029-13326416,13326505-133266...    27   8.1  
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879...    27   8.1  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +3

Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
           IF RA+QY +EY  +E++ ++L R+AR +G +YV  EAKL
Sbjct: 47  IFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKL 86


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +3

Query: 255 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 374
           IF RA+QY +EY  +E++ ++L R+AR +G +YV  E KL
Sbjct: 46  IFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKL 85


>02_05_1335 -
           35770403-35770543,35770630-35770755,35770859-35770942,
           35771444-35771656,35771759-35771977
          Length = 260

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +1

Query: 124 EDSKKLPAVXESXLKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRN 303
           E++KKL A+ E   +HR  R+   +       KR+SS++K      R ++    +++SR+
Sbjct: 185 EENKKLLALLEKERQHRSERKH-SSSASTTKHKRKSSSLKDTSPVGRTIDFNGADSSSRH 243


>10_08_0304 - 16640937-16642877
          Length = 646

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 246 EEGIFKRAEQYVKEY-RIKERDEIRLARQARNRGNY 350
           E G+ +R+ +  +E  R++  D+I LAR A  RG Y
Sbjct: 473 ESGVAERSVEVDRELVRVEAIDDIALARAAAERGEY 508


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -2

Query: 325  LASLISSRSLMRYSLTYCSALLKIPSSS*WQKNASLA*PVIS*CEEPLS 179
            L SL +   L R SL  CS++ K+PS   ++   +L   +I+ CE  LS
Sbjct: 1027 LMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLS 1075


>01_01_1077 +
           8485655-8486134,8486423-8486554,8487725-8487966,
           8488254-8488500
          Length = 366

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 408 LVDTTDSDDKCPIWLPRE 355
           L D+ DSD  CP WL  E
Sbjct: 242 LFDSIDSDGTCPAWLSEE 259


>06_02_0235 +
           13324961-13324965,13326029-13326416,13326505-13326618,
           13326869-13327428,13327513-13327624,13328475-13328519
          Length = 407

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 402 DTTDSDDKCPIWLPRERS-SCHDCVLVWLV*FHHVP 298
           + +  DD    W  R RS    D VL + V  HHVP
Sbjct: 342 EQSTGDDNLAAWSKRNRSIKDEDIVLWYTVGLHHVP 377


>02_04_0481 +
           23284296-23284448,23284553-23284753,23284855-23287971,
           23288510-23289353,23289468-23290120,23290573-23290676,
           23290898-23291000
          Length = 1724

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 163 LKHRKXREALRTKRLQVTLKRRSSAIKKKRESSRGLNSTSRNTASRNVMKSD*PD--KHA 336
           LKH    +    + L+ TL   +S ++K +++   LNS S N      +K+   D  KHA
Sbjct: 763 LKHALDEKNAELENLKQTLDGNNSVLEKLKQAWDELNSESENIKQALDVKNSEVDKLKHA 822

Query: 337 I 339
           +
Sbjct: 823 L 823


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,996,241
Number of Sequences: 37544
Number of extensions: 137229
Number of successful extensions: 369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)