Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0694
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 39 8e-04
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 27 1.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.3
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 26 5.7
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 5.7
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 5.7
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.6
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.6
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 38.7 bits (86), Expect = 8e-04
Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Frame = +2
Query: 287 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 442
G A L P Y+KY W Q+ YL L W L+K + L S + +I
Sbjct: 83 GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139
Query: 443 LGVSPVELKEGFHLDIEDYLIGY*RCAQNCLVWXXXXXXXXXXXXXXXXXXXXWNXNAGF 622
L V + FHL IE YL ++ F
Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSF 199
Query: 623 RLLNLKNDHLRKRF 664
++L+LKND LR+ F
Sbjct: 200 QVLSLKNDSLRRHF 213
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 508 VLTMCSELSRLAVNSVTRGDYERPLRISKFVMELXRRLQAIELEERS 648
VL++CSEL+R +VNSV G+Y P + ++ Q + L+ S
Sbjct: 162 VLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSFQVLSLKNDS 208
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 117 KNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 230
++LD+ E+ + T CK+VD+I ++ ++ I E
Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 554 TEFTARRD--NSEHIVNTQSDSLQCPNGNLLLTPLD*HLIFQPWS 426
++F A D N++ ++ T SL+C G L+T H I+ WS
Sbjct: 3430 SDFIAEVDVLNNDSLIKTVRYSLKCEKGFFLVTVTLFHGIYDGWS 3474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 124 STKNKNYARRFGLYVKRLTKFLGK 195
STK A +G YV++LTK + K
Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +3
Query: 60 KHVKMCDNELINKIFSDFQKNLDQEQEL----RETIRTICKEVDQ 182
K+ +C NE NK++ K+++ ++++ + I+ IC ++ Q
Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ 305
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 235 PASL*CITWSTVVASREIWSTSLHI 161
PA C++W+ V + +WS+ HI
Sbjct: 136 PAKRLCLSWAIVGMNAWVWSSVFHI 160
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 285 SWAFSKSRRACHMPEQCRLHCSVLLGALWSLPEKFGQPLYI*SESSR-VVLVLGRDSF 115
+WAF S +A + +LH L LW+ E++ P ++ + + V L L R+ +
Sbjct: 931 AWAFHSSNKAVLLDHTKKLHGKPL---LWNAVEEYAIPFWLNEQLLKDVFLELSRNHY 985
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 305 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 481
DA+ F H F+T Y Y I T+ + KG + TM + L + +
Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196
Query: 482 LDIEDYL 502
+D Y+
Sbjct: 197 IDFPIYV 203
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 236 HCSGMWQARLLFEKAHDGYARLKDAVP 316
HC +W+ + E+A D + R K +P
Sbjct: 71 HCPLLWKWSKVHEEAFDDFLRYKTRIP 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,132
Number of Sequences: 5004
Number of extensions: 51947
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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