Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0694
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329...    52   3e-07
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477...    28   5.9  
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    28   5.9  

>10_08_0176 +
           15432092-15432470,15432592-15432688,15432801-15432985,
           15433012-15433056,15433447-15433472,15435299-15435434,
           15435608-15435702
          Length = 320

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
 Frame = +2

Query: 290 YARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSP-- 457
           Y+RL + +   P  Y++Y   WR  TQ    ++A   WLE G L  H    E LG  P  
Sbjct: 143 YSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCMPGP 202

Query: 458 --------------VELKEG---FHLDIEDYLIGY*RCAQNCLVWXXXXXXXXXXXXXXX 586
                         ++LK     F LD+EDYL G    + +   +               
Sbjct: 203 CDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDCPRK 262

Query: 587 XXXXXWNXNAGFRLLNLKNDHLRKRF 664
                 + +A FR+LNL+ND LRK+F
Sbjct: 263 VLSFLTDLHASFRMLNLRNDFLRKKF 288



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 102 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGIAPACGK 257
           F  F+  LD+   LR+ IR +  EV+  SR A+  L ++H     +A   GK
Sbjct: 81  FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGK 131


>11_06_0051 -
           19645726-19646007,19646045-19646513,19647749-19647771,
           19647978-19648328
          Length = 374

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 48  RLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVL 209
           +L +   K   NE IN+I   F +   +E+E     R I +E+    +  TTV+
Sbjct: 196 KLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSIKVTTTVI 249


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
 Frame = +3

Query: 30  NKIKEPRLLIKHVKMCDNELINKIFSDFQKNLDQEQELR--ETIR-----TICKEVDQIS 188
           +++++ RL +K +K   +EL+ ++F   Q   ++E+E +  ET+          E+  +S
Sbjct: 103 DELRKRRLPVKGLK---DELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVS 159

Query: 189 REATTVLQVIH 221
           +E T  +  +H
Sbjct: 160 QETTVSITEVH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,293
Number of Sequences: 37544
Number of extensions: 337622
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)