Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0694
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37452| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.85 
SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)                       30   2.0  
SB_21193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   6.0  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_37452| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 211

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 293 RIHRGPSR-KVDELATCRSNAGFIVVYYLEHCGRFP 189
           R+H+G  R +  +   C S AG++ V+Y  H G  P
Sbjct: 24  RLHKGEKRYQCQQCGKCFSKAGYLTVHYRYHTGERP 59


>SB_32794| Best HMM Match : Gam (HMM E-Value=5.8)
          Length = 511

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 506 QSDSLQCPNGNLLLTPLD*HLIFQPWSRVK 417
           +SDSL+CP+ N L+   D   +F  W+ +K
Sbjct: 470 ESDSLECPSHNELIHNEDKEEVFDEWNLIK 499


>SB_21193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 506 QSDSLQCPNGNLLLTPLD*HLIFQPWSRVK 417
           +SDSL+CP+ N L+   D   +F  W+ +K
Sbjct: 280 ESDSLECPSHNELIHNEDKEEVFDEWNLIK 309


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 93   NKIFSDFQKNLDQEQELRETIRTICKEVDQISRE 194
            N    +   N ++ Q+LRE    ICKE +Q+ RE
Sbjct: 1299 NTSLEEKDNNEEEVQQLREWYDVICKEKEQLERE 1332


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +3

Query: 57   IKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREAT 200
            I  ++  D+E++  +  D +K LD+  E+R  +  I  +++++  + T
Sbjct: 1279 IATLRALDDEILKLLVEDLEKFLDEVDEMRGKLHKIVFKIEELLSQKT 1326


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 280 PRWIRKTERCCTTNRLLQVSGSLEIHDPTLLLSDSAHYMARE 405
           P W  ++E    T  +  V GS++   P LLL  + H + RE
Sbjct: 416 PMWFSESEDSTVTEIVESVGGSVDATQPKLLLRQTQH-LVRE 456


>SB_49606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 75  CDNELINKIFSDFQKNLDQEQELRE---TIRTICKEVDQISREATTVLQVIHYNEAGI 239
           CD  L + +    ++ LD E+EL E   T  ++ KE+D + ++A  +   +   EA +
Sbjct: 180 CDQGLFDHVCQLRERRLDLEEELAEEKKTSESLKKELDALVKKAKVIDSALKTAEADL 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,537,502
Number of Sequences: 59808
Number of extensions: 391420
Number of successful extensions: 1040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)