Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0691
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.40 
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    25   4.9  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.5  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   6.5  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 27   NRVKVTFRDEPGEGSGVARSFYTSVAEALLAN 122
            N +++ + DE G G G    FYTSV++    N
Sbjct: 1301 NILEIEYEDEVGSGLGPTLEFYTSVSKEFTLN 1332


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 338 LSVDARPYSHQXAPXTEELDTVEKDLEDTMNILHITRLN 454
           L    R  S +     +ELD    DLE+T+N L  T  N
Sbjct: 127 LDEQTRKLSERTEKQQDELDIALDDLEETLNTLKRTSEN 165


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 424  NEHLTHHQAQLGERLYPRVHSLHPTF 501
            N  L  H  +L ERL  R H+L  TF
Sbjct: 924  NSELKLHCFELSERLREREHTLQQTF 949


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 30  RVKVTFRDEPGEGSGVARSFYTSVAEALLA 119
           R+K TF+D+P E S +A S    +   ++A
Sbjct: 186 RMKETFKDDPEEDSNMAWSIIHKIKTEVVA 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,598
Number of Sequences: 5004
Number of extensions: 23400
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)