Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0691
(506 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 79 7e-15
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 78 2e-14
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 78 2e-14
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 29 9.3
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 29 9.3
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 29 9.3
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 29 9.3
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 29 9.3
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 29 9.3
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 29 9.3
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 29 9.3
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 29 9.3
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 29 9.3
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 29 9.3
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 29 9.3
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 29 9.3
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 29 9.3
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 29 9.3
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 29 9.3
AF307451-1|AAK30049.1| 578|Homo sapiens Cat eye syndrome critic... 29 9.3
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 29 9.3
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 79.4 bits (187), Expect = 7e-15
Identities = 36/46 (78%), Positives = 42/46 (91%)
Frame = +3
Query: 6 AQPPLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALLANEKLPPLE 143
A P+AV+RVKVTFRDEPGEGSGVARSFYT++A+A L+NEKLP LE
Sbjct: 2267 ATTPMAVHRVKVTFRDEPGEGSGVARSFYTAIAQAFLSNEKLPNLE 2312
Score = 35.5 bits (78), Expect = 0.11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 427 EHLTHHQAQLGERLYPRVHSLHPTFA 504
E L H+ LGERLYPRV ++ P FA
Sbjct: 2387 EPLPAHRQALGERLYPRVQAMQPAFA 2412
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 78.2 bits (184), Expect = 2e-14
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 6 AQPPLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALLANEKLPPLE 143
A P+AV+RVKVTF+DEPGEGSGVARSFYT++A+A L+NEKLP LE
Sbjct: 2268 ATTPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLE 2313
Score = 35.5 bits (78), Expect = 0.11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 427 EHLTHHQAQLGERLYPRVHSLHPTFA 504
E L H+ LGERLYPRV ++ P FA
Sbjct: 2388 EPLPAHRQALGERLYPRVQAMQPAFA 2413
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 78.2 bits (184), Expect = 2e-14
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 6 AQPPLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALLANEKLPPLE 143
A P+AV+RVKVTF+DEPGEGSGVARSFYT++A+A L+NEKLP LE
Sbjct: 2290 ATTPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLE 2335
Score = 35.5 bits (78), Expect = 0.11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 427 EHLTHHQAQLGERLYPRVHSLHPTFA 504
E L H+ LGERLYPRV ++ P FA
Sbjct: 2410 EPLPAHRQALGERLYPRVQAMQPAFA 2435
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 448 LGERLFPLIQAMHPTLA 464
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 559 LGERLFPLIQAMHPTLA 575
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 562 LGERLFPLIQAMHPTLA 578
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 557 LGERLFPLIQAMHPTLA 573
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 557 LGERLFPLIQAMHPTLA 573
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 562 LGERLFPLIQAMHPTLA 578
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 557 LGERLFPLIQAMHPTLA 573
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 562 LGERLFPLIQAMHPTLA 578
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 562 LGERLFPLIQAMHPTLA 578
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 557 LGERLFPLIQAMHPTLA 573
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 439 HHQAQL-GERLYPRVHSLHPTFA 504
H Q Q+ GERLYP +H +H A
Sbjct: 96 HEQKQMIGERLYPLIHDVHTQLA 118
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 439 HHQAQL-GERLYPRVHSLHPTFA 504
H Q Q+ GERLYP +H +H A
Sbjct: 96 HEQKQMIGERLYPLIHDVHTQLA 118
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 439 HHQAQL-GERLYPRVHSLHPTFA 504
H Q Q+ GERLYP +H +H A
Sbjct: 96 HEQKQMIGERLYPLIHDVHTQLA 118
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 439 HHQAQL-GERLYPRVHSLHPTFA 504
H Q Q+ GERLYP +H +H A
Sbjct: 77 HEQKQMIGERLYPLIHDVHTQLA 99
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 439 HHQAQL-GERLYPRVHSLHPTFA 504
H Q Q+ GERLYP +H +H A
Sbjct: 542 HEQKQMIGERLYPLIHDVHTQLA 564
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 439 HHQAQL-GERLYPRVHSLHPTFA 504
H Q Q+ GERLYP +H +H A
Sbjct: 542 HEQKQMIGERLYPLIHDVHTQLA 564
>AF307451-1|AAK30049.1| 578|Homo sapiens Cat eye syndrome critical
region candidate gene number 6 protein.
Length = 578
Score = 29.1 bits (62), Expect = 9.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 376 SRXRRAGYSGERSGGHNEHLTHHQA 450
SR RR G + SG HN HL HH A
Sbjct: 249 SRGRRGGAA---SGAHNHHLHHHHA 270
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 454 LGERLYPRVHSLHPTFA 504
LGERL+P + ++HPT A
Sbjct: 557 LGERLFPLIQAMHPTLA 573
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,209,900
Number of Sequences: 237096
Number of extensions: 1044813
Number of successful extensions: 2748
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -