Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0691
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    49   2e-06
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    49   2e-06
U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter...    27   5.9  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 3    SAQPPLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALL 116
            S   PLA  R++V F DEPGEG+GV RSFYT+ AE+ +
Sbjct: 2419 SGHAPLAGTRLRVHFIDEPGEGTGVTRSFYTAFAESCM 2456


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 3    SAQPPLAVNRVKVTFRDEPGEGSGVARSFYTSVAEALL 116
            S   PLA  R++V F DEPGEG+GV RSFYT+ AE+ +
Sbjct: 2419 SGHAPLAGTRLRVHFIDEPGEGTGVTRSFYTAFAESCM 2456


>U80441-8|AAB37656.1|  284|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 5 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 271 SNASCGRPSRAAPCGLPG 324
           S  SCG PS+  P G PG
Sbjct: 83  SQCSCGLPSQGCPAGAPG 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,636
Number of Sequences: 27780
Number of extensions: 149820
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)