Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0690
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    57   1e-10
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   3.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   3.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   3.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +3

Query: 165 QDVYKIGGIGTVPVGRVETGVLKPGTI 245
           QDVYKIGGIGTVPVGRVETGVLKPG +
Sbjct: 2   QDVYKIGGIGTVPVGRVETGVLKPGMV 28



 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = +2

Query: 257 PANXTTEVKSVEMHHEALQEAVPG 328
           PAN TTEVKSVEMHHEAL EAVPG
Sbjct: 33  PANITTEVKSVEMHHEALPEAVPG 56


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 527 FAENPRKS*PSYXVILLKSTXNSIKVWRCSH 619
           + + PR S P   + LL    + I  WR +H
Sbjct: 119 YRDEPRFSQPHQILTLLMDIDSLITKWRYNH 149


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 527 FAENPRKS*PSYXVILLKSTXNSIKVWRCSH 619
           + + PR S P   + LL    + I  WR +H
Sbjct: 279 YRDEPRFSQPHQILTLLMDIDSLITKWRYNH 309


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 527 FAENPRKS*PSYXVILLKSTXNSIKVWRCSH 619
           + + PR S P   + LL    + I  WR +H
Sbjct: 279 YRDEPRFSQPHQILTLLMDIDSLITKWRYNH 309


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 316 FLESFVVHLHRLDFSSXVG 260
           FLE  + H  R  FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,553
Number of Sequences: 336
Number of extensions: 3751
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)