BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0690
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 154 6e-38
03_01_0547 + 4093196-4093657,4094267-4095148 154 6e-38
03_01_0544 + 4082528-4082989,4083585-4084466 154 6e-38
03_01_0543 + 4076981-4077442,4078145-4079026 154 6e-38
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 54 7e-08
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 50 2e-06
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 49 3e-06
02_04_0462 + 23131433-23132836 47 1e-05
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 46 2e-05
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 43 2e-04
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 43 2e-04
11_06_0516 + 24502645-24504507 29 3.0
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 29 3.0
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 29 4.0
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 28 5.2
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15... 28 5.2
06_03_1165 - 28106604-28106915 28 5.2
06_03_0292 + 19207029-19207940 28 6.9
03_01_0019 + 167900-168343,168567-168751,169076-169430 28 6.9
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 28 6.9
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 27 9.2
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 27 9.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 154 bits (373), Expect = 6e-38
Identities = 68/93 (73%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P+ TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + FAE
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 100 bits (240), Expect = 8e-22
Identities = 51/80 (63%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETGVLKPG +
Sbjct: 246 GIGTVPVGRVETGVLKPGMV 265
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 154 bits (373), Expect = 6e-38
Identities = 68/93 (73%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P+ TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + FAE
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 100 bits (240), Expect = 8e-22
Identities = 51/80 (63%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETGVLKPG +
Sbjct: 246 GIGTVPVGRVETGVLKPGMV 265
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 154 bits (373), Expect = 6e-38
Identities = 68/93 (73%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P+ TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + FAE
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 100 bits (240), Expect = 8e-22
Identities = 51/80 (63%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETGVLKPG +
Sbjct: 246 GIGTVPVGRVETGVLKPGMV 265
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 154 bits (373), Expect = 6e-38
Identities = 68/93 (73%), Positives = 80/93 (86%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P+ TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAE 535
+QVI++NHPGQI NGY PVLDCHT + FAE
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE 362
Score = 100 bits (240), Expect = 8e-22
Identities = 51/80 (63%), Positives = 57/80 (71%)
Frame = +3
Query: 6 GDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKIG 185
GDNM+E ST + W+KG L+EALD I P RP+DKPLRLP QDVYKIG
Sbjct: 198 GDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIG 245
Query: 186 GIGTVPVGRVETGVLKPGTI 245
GIGTVPVGRVETGVLKPG +
Sbjct: 246 GIGTVPVGRVETGVLKPGMV 265
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +3
Query: 84 DGKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPV-GRVETGVLKPGT 242
DG CL++A+D + PP+R KPLRLP DV+ +G V + G+VE G + G+
Sbjct: 442 DGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGS 495
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +3
Query: 24 PSTKMPWFKGWQVERKEGKAD--GKC----LIEALDAILP-PARPTDKPLRLPXQDVYKI 182
P ++P +G + +G D GK L++A+D +P P R DK +P +DV+ I
Sbjct: 219 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPDPVRQLDKSFLMPIEDVFSI 278
Query: 183 GGIGTVPVGRVETGVLKPG 239
G GTV GRVE G +K G
Sbjct: 279 QGRGTVVTGRVEQGTIKTG 297
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 272 TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIV 451
T V VEM + L GDNVG ++ + +++RG V K K F A++ V
Sbjct: 313 TTVTGVEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEIYV 370
Query: 452 L 454
L
Sbjct: 371 L 371
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +3
Query: 84 DGKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
DG CL E LD I P R P+R+P D YK +GTV +G++E+G ++ G
Sbjct: 206 DGPCLFEVLDCIEVPLRDPKGPVRMPIIDKYK--DMGTVVMGKIESGTIREG 255
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P +V + + ++ A P +NV + + +++ G+V S NP +F
Sbjct: 262 PNKTNVKVIGISLDEHKVRRAGPAENVRVKLSGIEDEDIMAGFVL-SSIGNPVGAVTEFN 320
Query: 437 AQVIVLN--HPGQISNGYTPVLDCHT 508
AQ+ +L + GY VL H+
Sbjct: 321 AQLQILELLDNAIFTAGYKAVLHIHS 346
>02_04_0462 + 23131433-23132836
Length = 467
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 96 LIEALDAILP-PARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
LI+++D +P P R TD P L +DV+ I G GTV GR+E G +K G
Sbjct: 260 LIDSVDNYIPVPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVG 308
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 457
V VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ +
Sbjct: 324 VTGVEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKD 383
Query: 458 HPGQIS---NGYTPVLDCHTPTLPAN 526
G+ S GY P T + N
Sbjct: 384 EGGRHSPFFPGYRPQFYMRTTDVTGN 409
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 87 GKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
G CL E LD I P R P+R+P D YK +GTV +G++E+G + G
Sbjct: 162 GPCLFEVLDCIQVPLRDPKGPVRMPIIDKYK--DMGTVVMGKIESGTISEG 210
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P +V SV + ++ A PG+NV + + ++ G+V K NP ++F
Sbjct: 217 PNKANVKVISVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFR 275
Query: 437 AQVIVLN--HPGQISNGYTPVLDCHT 508
AQ+ +L + GY VL H+
Sbjct: 276 AQLQILELLDNAIFTAGYKAVLHIHS 301
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 87 GKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGT-VPVGRVETGVLKPGT 242
G CL++A+D++ P+R KPL LP DV K G G++ETG ++ G+
Sbjct: 459 GFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQFAAFGKLETGAIRIGS 511
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 87 GKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGT-VPVGRVETGVLKPGT 242
G CL++A+D++ P+R KPL LP DV K G G++ETG ++ G+
Sbjct: 459 GFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQFAAFGKLETGAIRIGS 511
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +2
Query: 287 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 466
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 467 QISNG 481
+I G
Sbjct: 170 EIRRG 174
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 340 TYIVSRYSFLESFVVHLHRLDF-SSXVGGGKTTM 242
TY +++ SFL + ++HL R+ F S + G K+TM
Sbjct: 288 TYNIAQISFLVASILHLRRVFFGGSYIRGHKSTM 321
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 88 ENASLKLSMPSCHLPAPLTSPCVFPXKTYTKS 183
E A++ +S P LP P P +FP + T+S
Sbjct: 21 EEAAVVVSQPQKTLPVPTAGPSLFPQQEVTQS 52
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 361 GHVLYVETYIVSRYSFLESFVVHLHRLDFSSXVGGGKTTMVP 236
G L +++ Y +E V L R +FSS +G G T P
Sbjct: 490 GWELLTFVWLLMLYMGMEPLVEKLQRAEFSSVIGSGTTADAP 531
>10_01_0013 +
154098-154101,154513-154673,154773-154847,155071-155571,
155873-156214,158107-158234,158296-158342,160117-160196,
160569-160654,161409-161556,161947-162082,162160-162488,
162953-163169,164547-164572
Length = 759
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 535 FCKICRQCGSVAIQDWCVTV*DLTRMVKHNDLSC 434
F + QC S+ +T LT MV+HN L C
Sbjct: 105 FLPLFVQCESIMTYQCAITSETLTHMVRHNALRC 138
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 277 SQVCGDAPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW 393
SQ G A SSP + R R +R E + A L CW
Sbjct: 62 SQTGGAAASSSPAAACGRAARSKRSEEEKMQKAYHLVCW 100
>06_03_0292 + 19207029-19207940
Length = 303
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 325 RYSFLESFVVHLHRLDFSSXVGGGKTTMVPGFNTPVSTLPTGTVPIPPI 179
R L++ + H SS +G G + G ++ VS G P PP+
Sbjct: 8 RQEQLQAVCLQKHLSSLSSSLGSGDLVSILGSSSGVSRSGAGAPPTPPL 56
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 223 PVSTLPTGTVPIPPILYTSXWGRRRGLSVGRAGGRMASRASMRHFPS 83
P PT T P PPI + G G S G GG + +RA+ P+
Sbjct: 59 PPPVAPTPTAPTPPI-PSPGTGSSNGSSGGGGGGWLNARATWYGAPN 104
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 460 SWSNLKRL-HTSLGLPHSHIACKFCRKSKKKLTVVLGNLT 576
+W+++K+L + S GLPH++ A R + + LT+ + N T
Sbjct: 121 TWNHMKQLTNISDGLPHANEAIDNARTAWENLTISVHNST 160
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 307 SPRSCTWRQCRFQRKERVRQGIASWLCCW*LQKQPT 414
+P TW + Q +R WLC W Q++PT
Sbjct: 217 TPNQRTWAE-GLQLAASIRFQFPQWLCSWDPQRRPT 251
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 289 HRLDFSSXVGGGKTTMVPGFNTPVSTLPTGT 197
+R+ F GG T P TP S +PT T
Sbjct: 720 YRIQFQRPNPGGANTAPPPATTPASAVPTST 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,974
Number of Sequences: 37544
Number of extensions: 463303
Number of successful extensions: 1604
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -