Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0690
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 149 2e-36
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 149 2e-36
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 149 2e-36
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 52 4e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.003
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.006
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.006
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.013
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.013
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.013
Z81502-3|CAB04104.1| 366|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 3.6
U21318-1|AAC46669.1| 457|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a prote... 28 4.7
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 6.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 149 bits (360), Expect = 2e-36
Identities = 69/97 (71%), Positives = 76/97 (78%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P N TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 248 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 307
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAENPRK 547
AQVI++NHPGQISNGYTPVLDCHT + F E K
Sbjct: 308 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEK 344
Score = 146 bits (355), Expect = 8e-36
Identities = 63/81 (77%), Positives = 72/81 (88%)
Frame = +3
Query: 3 HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKI 182
+GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLP QDVYKI
Sbjct: 163 NGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKI 222
Query: 183 GGIGTVPVGRVETGVLKPGTI 245
GGIGTVPVGRVETG++KPG +
Sbjct: 223 GGIGTVPVGRVETGIIKPGMV 243
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 149 bits (360), Expect = 2e-36
Identities = 69/97 (71%), Positives = 76/97 (78%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P N TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAENPRK 547
AQVI++NHPGQISNGYTPVLDCHT + F E K
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEK 378
Score = 146 bits (355), Expect = 8e-36
Identities = 63/81 (77%), Positives = 72/81 (88%)
Frame = +3
Query: 3 HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKI 182
+GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLP QDVYKI
Sbjct: 197 NGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKI 256
Query: 183 GGIGTVPVGRVETGVLKPGTI 245
GGIGTVPVGRVETG++KPG +
Sbjct: 257 GGIGTVPVGRVETGIIKPGMV 277
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 149 bits (360), Expect = 2e-36
Identities = 69/97 (71%), Positives = 76/97 (78%)
Frame = +2
Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
P N TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAENPRK 547
AQVI++NHPGQISNGYTPVLDCHT + F E K
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEK 378
Score = 146 bits (355), Expect = 8e-36
Identities = 63/81 (77%), Positives = 72/81 (88%)
Frame = +3
Query: 3 HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKI 182
+GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLP QDVYKI
Sbjct: 197 NGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKI 256
Query: 183 GGIGTVPVGRVETGVLKPGTI 245
GGIGTVPVGRVETG++KPG +
Sbjct: 257 GGIGTVPVGRVETGIIKPGMV 277
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/72 (43%), Positives = 36/72 (50%)
Frame = +1
Query: 4 TETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPXKTYTKS 183
TETTC C GSRDG + RK L E S +L PS H A LT VF + T+S
Sbjct: 180 TETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRS 239
Query: 184 VVLVPCPSAELK 219
L P S L+
Sbjct: 240 EELEPSQSDVLR 251
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 84 DGKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETG 224
DG CL+E +D+ + P P+D PLR+ DV K+ V G++E+G
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 84 DGKCLIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETG 224
DG CL+E +D+ + P P+D PLR+ DV K+ V G++E+G
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 435
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/91 (28%), Positives = 44/91 (48%)
Frame = +2
Query: 224 CVETRYHCCLXPANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 403
CV+ + P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSP 421
Query: 404 NNPPKGAADFTAQVIVLNHPGQISNGYTPVL 496
++ K F A+V+VL H I++GY+ VL
Sbjct: 422 DSLAKTGRVFDAEVLVLEHRSIIASGYSCVL 452
Score = 33.9 bits (74), Expect = 0.095
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 87 GKCLIEALDAILPP-ARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
G C IE +D +LP R + P+R + Y +GTV +G++E+G ++ G
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKG 367
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 457
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 458 HPGQISNGYTPVL 496
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 39 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVG 209
P +G + EG+ D C LI+ALD++ P R +P I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 210 RVETGVLKPG 239
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 39 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPXQDVYKIGGIGTVPVG 209
P +G + EG+ D C LI+ALD++ P R +P I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 210 RVETGVLKPG 239
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 75 GKADGKCLIEALDA--ILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 281
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 388
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 75 GKADGKCLIEALDA--ILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 388
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 75 GKADGKCLIEALDA--ILPPARPTDKPLRLPXQDVYKIGGIGTVPVGRVETGVLKPG 239
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 388
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>Z81502-3|CAB04104.1| 366|Caenorhabditis elegans Hypothetical
protein F14B6.3 protein.
Length = 366
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 523 KFCRKSKKKLTVVLGNLTEVNP-KFHQSLEMQPL 621
K+C +++KK+T+V+ + + P F +S E +PL
Sbjct: 31 KYCNETQKKITIVIDSNNIIRPFVFDESNEREPL 64
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 278 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 457
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 458 H 460
H
Sbjct: 509 H 509
>U21318-1|AAC46669.1| 457|Caenorhabditis elegans Hypothetical
protein K03H9.3 protein.
Length = 457
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 378 VVMLLVTPKTTHLRVLQILQLKSLCLTILVKSQTVTHQSWIATLPHCL--QILQKIQEKV 551
V++ V+P+T + + I + S+C T + T T + + P CL L+K Q V
Sbjct: 156 VMVFAVSPETANATFISIAKNLSICSTECIAKDTTTPKEF----PSCLFPTFLEKNQAPV 211
Query: 552 DRRT 563
++R+
Sbjct: 212 EKRS 215
>AF039046-1|AAB94210.1| 458|Caenorhabditis elegans F-box a protein
protein 195 protein.
Length = 458
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 421 CCRFYSSSHCA*PSWSNLKRLHTSLGLPHSHIACKFCRKSKKKLTVVLGNLTEVNPKFHQ 600
CC S++ PS +N K++ SL + C+FCR +++ L V+ F+Q
Sbjct: 73 CCLSRSANLPNLPSTANFKKIFPSLLSTANFRICRFCR-ARQTLRFAARLRFRVSANFYQ 131
Query: 601 SLEMQP 618
+ P
Sbjct: 132 VSKFDP 137
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 444 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 313
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,260
Number of Sequences: 27780
Number of extensions: 362910
Number of successful extensions: 1068
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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