Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0690
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   182   2e-48
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   175   3e-46
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   164   5e-43
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   159   2e-41
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    99   3e-23
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.34 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  182 bits (444), Expect = 2e-48
 Identities = 85/97 (87%), Positives = 87/97 (89%)
 Frame = +2

Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
           PA  TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT
Sbjct: 282 PAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 341

Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAENPRK 547
           AQVIVLNHPGQISNGYTPVLDCHT  +   FA+   K
Sbjct: 342 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEK 378



 Score =  159 bits (386), Expect = 2e-41
 Identities = 71/81 (87%), Positives = 74/81 (91%)
 Frame = +3

Query: 3   HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKI 182
           HGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK LRLP QDVYKI
Sbjct: 197 HGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKI 256

Query: 183 GGIGTVPVGRVETGVLKPGTI 245
           GGIGTVPVGRVETGVLKPG +
Sbjct: 257 GGIGTVPVGRVETGVLKPGMV 277


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  175 bits (426), Expect = 3e-46
 Identities = 81/97 (83%), Positives = 85/97 (87%)
 Frame = +2

Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 436
           PA  TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFT
Sbjct: 282 PAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFT 341

Query: 437 AQVIVLNHPGQISNGYTPVLDCHTPTLPANFAENPRK 547
           AQVIVLNHPGQISNGYTPVLDCHT  +   FAE   K
Sbjct: 342 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK 378



 Score =  155 bits (375), Expect = 4e-40
 Identities = 68/81 (83%), Positives = 74/81 (91%)
 Frame = +3

Query: 3   HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKI 182
           HGDNMLEPS K PW+KGW+VERK+G ADGK LIEALDAILPP+RPTDK LRLP QDVYKI
Sbjct: 197 HGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKI 256

Query: 183 GGIGTVPVGRVETGVLKPGTI 245
           GGIGTVPVGRVETG+LKPG +
Sbjct: 257 GGIGTVPVGRVETGILKPGML 277


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  164 bits (399), Expect = 5e-43
 Identities = 75/89 (84%), Positives = 79/89 (88%)
 Frame = +2

Query: 281 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 460
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 461 PGQISNGYTPVLDCHTPTLPANFAENPRK 547
           PGQISNGYTPVLDCHT  +   FAE   K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEK 89


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  159 bits (386), Expect = 2e-41
 Identities = 71/81 (87%), Positives = 74/81 (91%)
 Frame = +3

Query: 3   HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPXQDVYKI 182
           HGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK LRLP QDVYKI
Sbjct: 140 HGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKI 199

Query: 183 GGIGTVPVGRVETGVLKPGTI 245
           GGIGTVPVGRVETGVLKPG +
Sbjct: 200 GGIGTVPVGRVETGVLKPGMV 220



 Score =  102 bits (245), Expect = 2e-24
 Identities = 48/50 (96%), Positives = 48/50 (96%)
 Frame = +2

Query: 257 PANXTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 406
           PA  TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 225 PAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 99.1 bits (236), Expect = 3e-23
 Identities = 42/48 (87%), Positives = 44/48 (91%)
 Frame = +3

Query: 3   HGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 146
           HGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 124 HGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 621 QWLHLQTLMEFXVDFSK-ITXYDGQLFLGFSAKFAGNVG 508
           +W HL TL+EF ++  K ++  + Q F  F  K   N G
Sbjct: 863 RWGHLSTLVEFALELKKALSSINEQSFNHFVLKMGINHG 901


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 359 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 466
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 562 LGNLTEVNPKFHQSL 606
           LG LTE NPK  +S+
Sbjct: 671 LGKLTETNPKLARSV 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,339
Number of Sequences: 438
Number of extensions: 4096
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)