Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0687
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 73 4e-14
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 40 3e-04
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 40 3e-04
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 38 0.002
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 35 0.008
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 33 0.044
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 33 0.044
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 31 0.14
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 29 0.41
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 29 0.55
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 29 0.55
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 29 0.55
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 28 0.95
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 0.95
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 28 1.3
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.3
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 1.7
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 2.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 2.2
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 2.2
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 2.9
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 27 2.9
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 2.9
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 2.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 3.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.1
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.7
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 6.7
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 8.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.9
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 8.9
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 8.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 8.9
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 25 8.9
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 72.5 bits (170), Expect = 4e-14
Identities = 35/66 (53%), Positives = 44/66 (66%)
Frame = +1
Query: 313 PDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIIC 492
P E I LD SQL AY+ LTK ++IQGPPGTGK+F+ +K TLL N P+L+ C
Sbjct: 367 PGEYI-LDSSQLKAYQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVAC 425
Query: 493 YTNHAL 510
TNHA+
Sbjct: 426 QTNHAV 431
Score = 34.7 bits (76), Expect = 0.011
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 86 EAYLMVESEV-FFEPYHRVLKVLQNSRPDELPMKKYIVDVDNETQPPRYLNSDTR 247
E Y+M+E+ ++E Y VL+ LQ PMK Y+V + + +++ ++ R
Sbjct: 290 EEYVMIEATSGYWEAYKHVLRSLQRLSASTFPMKDYLVHCKSNQETAKHIQNNPR 344
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +1
Query: 331 LDESQLNAYKFALT-KEFAVIQGPPGTGKTFLGVKIASTL-LRN 456
L+ SQ A KF++ KE ++I GPPGTGKT V+I L LRN
Sbjct: 210 LNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLVLRN 253
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 39.9 bits (89), Expect = 3e-04
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 289 PVLRPDLWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA---STLLRNL 459
P L DL L+ SQ A + L+K ++IQGPPGTGKT + +T+
Sbjct: 379 PKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPGTGKTVTSASVVYHLATMQSRK 438
Query: 460 SLEGTPMLIICYTNHAL 510
+P+L+ +N A+
Sbjct: 439 RKSHSPVLVCAPSNVAV 455
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 331 LDESQLNAYKFALTKE-FAVIQGPPGTGKTFLGVKIASTLLRNLS 462
++E Q A AL F +IQGPPGTGKT + I S LL +LS
Sbjct: 1130 VNEPQAKAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLS 1174
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 35.1 bits (77), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 319 ESIGLDESQLNA-YKFALTKEFAVIQGPPGTGKT 417
+S G++E Q A Y ++ F +IQGPPGTGKT
Sbjct: 1267 KSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 32.7 bits (71), Expect = 0.044
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 LDESQLNAYKFALTKE-FAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHA 507
L+E Q+ A K E +++I G PGTGKT S+L+R+L + +L+ +T+ A
Sbjct: 933 LNEDQITALKKCHAAEHYSLILGMPGTGKT----TTISSLIRSLLAKKKKILLTSFTHLA 988
Query: 508 LIN 516
+ N
Sbjct: 989 VDN 991
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 32.7 bits (71), Expect = 0.044
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTL-LRNLSLEGTPMLIICYTNHALIN 516
++ GPPGTGKT L +A+ L L +S++G P L+ Y + N
Sbjct: 692 LLYGPPGTGKTLLAKAVATELSLEFVSIKG-PELLNMYVGESEAN 735
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 358 KFALTKEFAVIQ-GPPGTGKTFLGVKIASTLLRN-LSLEGTPML 483
+F +T V+ GPPGTGKT L IA+ N +S++G +L
Sbjct: 525 RFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELL 568
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
++ GPPGTGKT + +A+
Sbjct: 262 LMYGPPGTGKTLMARAVAN 280
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIASTLLR 453
GPPG GKT +G IAS L R
Sbjct: 578 GPPGVGKTSVGKSIASALNR 597
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.55
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTL 447
++ GPPGTGKT L +A++L
Sbjct: 170 LLYGPPGTGKTLLARAVAASL 190
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 29.1 bits (62), Expect = 0.55
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 382 AVIQGPPGTGKTFLGVKIASTL-LRNLSLEGTPML 483
A++ GPPGTGKT L A + LS+ G+ L
Sbjct: 332 AILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFL 366
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 29.1 bits (62), Expect = 0.55
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 250 VSRIRVQISWWLSFIVHIHNV 188
VS++ +WWLSF H H+V
Sbjct: 87 VSKLESTSTWWLSFTSHFHDV 107
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 28.3 bits (60), Expect = 0.95
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 274 EEIQFPVLRPDLWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIA 438
E I+ PV P+L+ ES+G+ + + ++ GPPGTGKT L +A
Sbjct: 159 EVIELPVKHPELF--ESLGIPQPK-----------GILLYGPPGTGKTLLARAVA 200
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 0.95
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +1
Query: 274 EEIQFPVLRPDLWPDESIGLDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIAS 441
E + +P LRPDL+ GL E F GPPGTGKT L +A+
Sbjct: 473 EAVVYPFLRPDLFQ----GLREPARGMLLF----------GPPGTGKTMLARAVAT 514
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRN 456
++ GPPGTGKT L +A++ N
Sbjct: 172 LLYGPPGTGKTMLVKAVANSTAAN 195
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 248 IAYQSSNILVVE--FHCPHPQCISSWEARQVLNFVKL 144
I Y SN++VV+ + CP P C +++ + L + KL
Sbjct: 336 IDYPGSNLVVVDKPYKCPVPNCDKAYKNQNGLKYHKL 372
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTLLRN-LSLEGTPML 483
++ GPPG GKT L +A+ N +S+ G +L
Sbjct: 530 LLWGPPGCGKTLLAKAVANESKANFISIRGPELL 563
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTL 447
++ GPPG GKT L +A+ L
Sbjct: 212 LLHGPPGCGKTMLANALANEL 232
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTL-LRNLSL 465
+I G PGTGKT L ++A T L N+ +
Sbjct: 12 IICGTPGTGKTTLAEQVAETTELENICI 39
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
++ GPPGTGK++L +A+
Sbjct: 166 LLYGPPGTGKSYLAKAVAT 184
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 5 NLCYGYQITEINIAVAFQNPVSNKIFSEAYLMVESE 112
NLC+G TEI V ++ +S K FS+ + E +
Sbjct: 326 NLCHGIDNTEITTQVQIKSMLSAKNFSQQKVKSEED 361
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 191 IVDVDNETQPPRYLNSDTRYAKPNQGVLKKYNSQSCDQTYGQM 319
++ + PP+Y D ++ +Q VLK + +S + Y +
Sbjct: 612 LMSIIENVLPPKYFTPDLMTSRADQLVLKSFVKESLPEIYSHL 654
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIASTL 447
++ GPPGTGKT + +I L
Sbjct: 308 LLYGPPGTGKTLIARQIGKML 328
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIA 438
++ GPPGTGKT L +A
Sbjct: 304 LLTGPPGTGKTMLARAVA 321
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIASTL-LRNLSLEGTPML 483
G PG GKT+L I+ST ++ +S++G +L
Sbjct: 647 GYPGCGKTYLASAISSTFPVQFISIKGPELL 677
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIAS 441
GPPGTGKT L +A+
Sbjct: 419 GPPGTGKTMLARAVAT 434
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 361 FALTKEFAVIQ-GPPGTGKTFL 423
F+LTK VI GPPG+GK+ L
Sbjct: 2508 FSLTKNRCVIFCGPPGSGKSML 2529
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +2
Query: 110 EVFFEPYHRVLKVLQNSRPDELPMKKYIVDVDNETQPPRYL 232
+V E R + V+ ++ P++LP+ + +VD+ ++ P+ L
Sbjct: 3604 KVNVELLFRRISVISHNVPEDLPLNQTLVDLVSQATNPQQL 3644
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 388 IQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHALIN 516
+ G PGTGKT L + ++ + P + +CY N IN
Sbjct: 197 VSGAPGTGKTVLLHNVLDHVVSDY-----PKVNVCYINCMTIN 234
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
+ GPPGTGKT + +A+
Sbjct: 304 LFHGPPGTGKTLMARALAA 322
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 279 NTIPSLATRPMAR*INRPRRISVKCIQIRFDQRVRRH 389
NT P++ +R M I + I ++CI ++ + + RH
Sbjct: 327 NTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEELARH 363
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
++ GPPGTGKT +A+
Sbjct: 217 MLYGPPGTGKTLCARAVAN 235
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 123 SLTIECLKFYKIQDLTSFP 179
SL++E K YK D+T FP
Sbjct: 1514 SLSLEIWKCYKAYDITEFP 1532
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
++ G PGTGKT L +A+
Sbjct: 229 ILYGAPGTGKTLLAKAVAN 247
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 79 YFIGYWILKGYSNIYF 32
YFI W+ KG NI F
Sbjct: 89 YFINAWLFKGIENITF 104
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
+ GPPGTGKT + +A+
Sbjct: 410 LFHGPPGTGKTLMARVLAA 428
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -2
Query: 373 WSKRICMHLTEIRLGLLIHLAIGLVARLGI 284
W+KR+ H + G++ HL V+ G+
Sbjct: 214 WAKRMIEHYNLLEEGMIKHLTASAVSGFGV 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,051
Number of Sequences: 5004
Number of extensions: 60497
Number of successful extensions: 204
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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