Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0687
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 61 7e-10
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 42 4e-04
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 42 4e-04
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 42 5e-04
AF003740-7|AAC48142.2| 625|Caenorhabditis elegans Hypothetical ... 37 0.010
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr... 32 0.38
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 32 0.38
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 29 2.0
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical p... 29 2.7
Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical p... 29 2.7
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 29 2.7
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 29 3.6
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 29 3.6
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 28 4.7
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 28 6.2
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 60.9 bits (141), Expect = 7e-10
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSL--EGTPMLIICYTNH 504
+DESQ A+ E ++IQGPPGTGKT +GV+I T+L+N S P+L++C+TN
Sbjct: 809 MDESQRLAFCNTFKYELSLIQGPPGTGKTHIGVQIVKTILQNRSYWKITEPILVVCFTNS 868
Query: 505 ALIN 516
L N
Sbjct: 869 GLDN 872
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLR 453
L+ SQ+ A K LT+ ++IQGPPGTGKT + I L++
Sbjct: 446 LNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQ 486
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLR 453
L+ SQ+ A K LT+ ++IQGPPGTGKT + I L++
Sbjct: 446 LNSSQMQAVKQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQ 486
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 340 SQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
SQ+ A K + ++ GPPGTGKT + V+I S + N + T LI+ ++N AL
Sbjct: 809 SQVEAIKSGMQPGLTMVVGPPGTGKTDVAVQIISNIYHNWPNQRT--LIVTHSNQAL 863
>AF003740-7|AAC48142.2| 625|Caenorhabditis elegans Hypothetical
protein C41D11.7 protein.
Length = 625
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 334 DESQLNAYKFALT--KEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHA 507
+E Q A K AL ++ IQGPPGTGKTF + LL L + ++++ T A
Sbjct: 67 NEKQRTAIKMALNENRKLVCIQGPPGTGKTF----TLTLLLCRLIQQKKQVVVLAPTREA 122
Query: 508 LIN 516
L N
Sbjct: 123 LAN 125
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 331 LDESQLNAYKFALTKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHAL 510
L E +N K ++ GPPGTGKT L +A L ++ + + +++ +H+L
Sbjct: 159 LSEKHVNT-KIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSL 217
Query: 511 INSW 522
+ W
Sbjct: 218 FSKW 221
>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
protein F43G6.1b protein.
Length = 1069
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 LDESQLNAYKFAL-TKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHA 507
L+ Q A AL T++F +++G PG+GKT L S L++ L +L+ +T+ A
Sbjct: 650 LNNEQRKAVVHALATEDFMMVEGLPGSGKTTL----ISVLIQCLVATNKKVLLAAFTHSA 705
Query: 508 LIN 516
+ N
Sbjct: 706 VDN 708
>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical
protein F43G6.1a protein.
Length = 1105
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 LDESQLNAYKFAL-TKEFAVIQGPPGTGKTFLGVKIASTLLRNLSLEGTPMLIICYTNHA 507
L+ Q A AL T++F +++G PG+GKT L S L++ L +L+ +T+ A
Sbjct: 686 LNNEQRKAVVHALATEDFMMVEGLPGSGKTTL----ISVLIQCLVATNKKVLLAAFTHSA 741
Query: 508 LIN 516
+ N
Sbjct: 742 VDN 744
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 379 FAVIQGPPGTGKTFLGVKIASTL 447
FA+I+GP G GK+FLG A TL
Sbjct: 81 FAIIEGPLGCGKSFLGRYAAQTL 103
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF + V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 511 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 558
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF + V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 510 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 557
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 358 KFALTKEFAVI-QGPPGTGKTFLGVKIASTLLRN-LSLEGTPMLIICY 495
KF + V+ GPPG GKT L IA+ N +S++G +L + +
Sbjct: 510 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 557
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
V+ GPPGTGKT + IAS
Sbjct: 230 VLAGPPGTGKTLIARAIAS 248
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
V+ GPPGTGKT + IAS
Sbjct: 230 VLAGPPGTGKTLIARAIAS 248
>Z72507-13|CAH60789.1| 515|Caenorhabditis elegans Hypothetical
protein F17C11.7b protein.
Length = 515
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 287 NCISSV-HPGSVWRIAYQSSNILVVEFHCPHPQCISSWE 174
N IS++ HP ++ Y SS+ LVVE C QC S E
Sbjct: 172 NGISTLLHPSKLYNSVYHSSH-LVVEQQCDKDQCNSKME 209
>Z72507-10|CAA96629.1| 531|Caenorhabditis elegans Hypothetical
protein F17C11.7a protein.
Length = 531
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 287 NCISSV-HPGSVWRIAYQSSNILVVEFHCPHPQCISSWE 174
N IS++ HP ++ Y SS+ LVVE C QC S E
Sbjct: 188 NGISTLLHPSKLYNSVYHSSH-LVVEQQCDKDQCNSKME 225
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 385 VIQGPPGTGKTFLGVKIAS 441
V+ GPPGTGKT + IAS
Sbjct: 230 VLAGPPGTGKTLIARAIAS 248
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIASTL 447
GPPGTGKT L +AS L
Sbjct: 183 GPPGTGKTLLARAVASQL 200
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIASTL 447
GPPGTGKT L +AS L
Sbjct: 191 GPPGTGKTLLARAVASQL 208
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 394 GPPGTGKTFLGVKIAS 441
GPPGTGKT +G +AS
Sbjct: 356 GPPGTGKTMIGRCVAS 371
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 382 AVIQGPPGTGKTFL 423
A++ GPPGTGKT L
Sbjct: 329 AILTGPPGTGKTLL 342
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,007,122
Number of Sequences: 27780
Number of extensions: 326485
Number of successful extensions: 927
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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