Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0685
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   126   1e-29
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    35   0.060
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    31   0.73 
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    29   2.2  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    29   2.2  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        29   2.2  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical p...    27   9.1  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  126 bits (305), Expect = 1e-29
 Identities = 53/82 (64%), Positives = 72/82 (87%)
 Frame = +2

Query: 11  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 190
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 191 ARVRKNTEARRKGRHCGFGKRK 256
            R R+  EARRKGRH G+GKR+
Sbjct: 61  FRAREYEEARRKGRHTGYGKRR 82



 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/84 (54%), Positives = 58/84 (69%)
 Frame = +1

Query: 253 KGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 432
           +GTANARMP+K LW                AKK+D+HLYH LY++AKGN FKNK+ L+EY
Sbjct: 82  RGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEY 141

Query: 433 IHRKKAEKARTKMLSDQAEARRNK 504
           I +KK E  R K L+DQA+ARR+K
Sbjct: 142 IFKKKTENKRAKQLADQAQARRDK 165


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 322 IFLEPFVFVPIVPSVAYAHWQYLSLTKA-TVTTLSTCLCVFADTGAGVDCYRFLDDETIL 146
           IF+EPF    IV    +  W+   L  A  +  ++T  C+FAD  +     R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFAD-ASPAKWTRLQDDDVAI 460

Query: 145 DHLTDVLSGVGVCDLIDFI 89
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 555 PPSWRQYVPRGACVPPYFIAAGLSL 481
           P SW QY P+G C+ P  + A  S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 107  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 241
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 370 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARN 534
           H     A+ N  K + V++   H+KKA      +    A ARRN ++R A AA N
Sbjct: 312 HKKKALARLNALKRQHVVVA--HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 379  YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAAR 531
            Y++    V   +  +  Y+ R+K E+ R  ++  QA  + N+VRR+    R
Sbjct: 852  YLQMHRAVIVMQSAVRGYLERRKYEQIRDSIIGIQAMFKANRVRRYVEKLR 902


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 379  YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAAR 531
            Y++    V   +  +  Y+ R+K E+ R  ++  QA  + N+VRR+    R
Sbjct: 852  YLQMHRAVIVMQSAVRGYLERRKYEQIRDSIIGIQAMFKANRVRRYVEKLR 902


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 379  YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAAR 531
            Y++    V   +  +  Y+ R+K E+ R  ++  QA  + N+VRR+    R
Sbjct: 852  YLQMHRAVIVMQSAVRGYLERRKYEQIRDSIIGIQAMFKANRVRRYVEKLR 902


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 508 RRHASAARNVLPPRRRNCCRPSLEKTK 588
           RRHAS     +PP   NC +P+ ++T+
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTR 40


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 62   GKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG-RHC 238
            G    W++PN   ++  T  + N+   I   + I K + +    R+  + +  +   R  
Sbjct: 1159 GYDHAWVNPNSKLKLRATLGQCNLASSIVSDMNISKTLCIFESCRLYMSNDLTKDAVRFE 1218

Query: 239  GFGKRKVLPMR 271
            G+G +KV P +
Sbjct: 1219 GYGTQKVSPKK 1229


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 119 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 232
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 283 SVAYAHWQYLSLTKATVTTLSTCLCVFADTGAGVDCYRFLDDE 155
           S  Y  W+ ++L K     L  C CV   +       +FLD E
Sbjct: 137 SKQYEDWRNVTLIKGYERELEKCDCVLTSSSTETGTVKFLDRE 179


>Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = -2

Query: 479 SLSIFVLAFSAFFLWMYSMSTRLFLNTLPF---AFM*SEWYRCLSIFLAVLYFRSNFLRT 309
           ++++    F+ F   +Y    R  +  L F   AF+ S  ++C  ++   +Y     LR 
Sbjct: 401 TMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFI-SGAFQCAYVYTPEVY--PTTLRA 457

Query: 308 LCLCTHSSFCGIRALAVPFSYQSHSDDPFYVPLCFCGHGRGSGLL 174
           + L T S+   I A+  PF  Q  S+    +P+   G     GL+
Sbjct: 458 VGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAAILGLI 502


>Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = -2

Query: 479 SLSIFVLAFSAFFLWMYSMSTRLFLNTLPF---AFM*SEWYRCLSIFLAVLYFRSNFLRT 309
           ++++    F+ F   +Y    R  +  L F   AF+ S  ++C  ++   +Y     LR 
Sbjct: 401 TMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFI-SGAFQCAYVYTPEVY--PTTLRA 457

Query: 308 LCLCTHSSFCGIRALAVPFSYQSHSDDPFYVPLCFCGHGRGSGLL 174
           + L T S+   I A+  PF  Q  S+    +P+   G     GL+
Sbjct: 458 VGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAAILGLI 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,046
Number of Sequences: 27780
Number of extensions: 309895
Number of successful extensions: 929
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)