Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0681
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...   115   8e-27
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    27   2.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.1  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   6.1  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    25   8.0  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.0  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score =  115 bits (276), Expect = 8e-27
 Identities = 49/83 (59%), Positives = 64/83 (77%)
 Frame = +1

Query: 1   WRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAQVRDNSRHVILGT 180
           WR KL++QRGAV A E++NNSCKLA+WTV+ALLAG D +K G+VSR+  RD   H ILG 
Sbjct: 435 WRSKLESQRGAVFATEMKNNSCKLARWTVEALLAGVDSMKVGFVSRSNARDAQHHGILGV 494

Query: 181 QQFKPHEFAAQINLSMDNAWGIL 249
             +KP + A+Q+NLS+ N WGI+
Sbjct: 495 VAYKPADLASQMNLSLSNGWGIV 517



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 22/38 (57%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 IIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDA 368
           I D+C+K  DGKY+++KDPN+P++RLY +P NTFE  A
Sbjct: 520 IADVCLKMPDGKYVLVKDPNRPILRLYSVPPNTFEEAA 557


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 5   DRSWTRSAAPCSPTSCGTTPASSPS 79
           D S   + AP +P S G+TP S+PS
Sbjct: 227 DSSPILTMAPSTPVSVGSTPPSTPS 251


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 11  SWTRSAAPCSPTSCGTTPASSPSGPCRHYXRARTRSSS 124
           S T S++  SP+S  TT  +SPS        + + SSS
Sbjct: 134 STTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSS 171


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 243 HPAVIIDICMKQKDGKYLIMKDPNKPLIRLYD 338
           HP ++  I   + +  Y ++ +P KP I L+D
Sbjct: 569 HPNIVKMITFFEDNENYYLLTEPQKPGIDLFD 600


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 110 SEPASNACTVHLASLQELFRSSLASTAPRCVS 15
           + PA N   VH+ASL +L R  L S  P+  S
Sbjct: 84  NRPADNPLIVHVASLDQL-RRLLLSAYPKAKS 114


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 164 WRELSRTCARDT*PNLIWSEPASNACTVHLASLQELFRSSLAS 36
           W+ LS    ++T  N + S   S      L S QEL  SSL S
Sbjct: 104 WKGLSAMSGKNTFINGLQSYLISETALPELGSFQELSTSSLGS 146


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 113 WSEPASNACTVHLASLQELFRSSLASTAPRCV 18
           WS+  SN     + SL+E    +LAST+ RC+
Sbjct: 561 WSQHCSNFNKESMLSLREFIMKALASTS-RCL 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,177
Number of Sequences: 5004
Number of extensions: 38357
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)