Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0681
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0140 - 27982037-27983794 116 2e-26
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 31 1.2
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 31 1.2
07_01_0305 - 2181727-2184793,2185635-2185945 30 1.6
08_02_1561 + 27880694-27881596 30 2.1
08_02_0878 + 22152437-22152532,22152619-22152718,22152907-221529... 29 4.8
03_01_0615 + 4523202-4524518 29 4.8
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 4.8
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 28 6.3
12_02_0587 + 20835741-20836115,20836183-20836218,20836409-208366... 28 8.4
06_01_1171 - 10007714-10009141 28 8.4
>05_07_0140 - 27982037-27983794
Length = 585
Score = 116 bits (279), Expect = 2e-26
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +1
Query: 1 WRQKLDTQRGAVLANELRNNSCKLAKWTVQALLAGSDQIKFGYVSRAQVRDNSRHVILGT 180
WRQKL+TQRGAVLA EL+NN+ KLA+WT QALLAG+D +K GYVSR RD+ H IL
Sbjct: 410 WRQKLETQRGAVLATELKNNANKLARWTCQALLAGADMMKLGYVSRVHPRDHYNHAILTV 469
Query: 181 QQFKPHEFAAQINLSMDNAWGIL 249
+KP +FA QINL+ N WGI+
Sbjct: 470 MGYKPRDFATQINLNTSNMWGIV 492
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 255 IIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDASEESGDEQ 392
I+DICMK ++GKY+++KDP KP +R+Y++P + FE+D EE E+
Sbjct: 495 IVDICMKFEEGKYVLVKDPAKPQVRIYEVPSDAFENDYVEEPLPEE 540
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 SAAPCSPTSCGTTPASSP-SGPCRHYXRARTRSSS 124
S++P SP+S + +SSP S PC+ R RT S+
Sbjct: 17 SSSPSSPSSSSSEDSSSPMSMPCKRRARPRTEKST 51
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 23 SAAPCSPTSCGTTPASSP-SGPCRHYXRARTRSSSVTCPARR 145
S++P SP+S + +SSP S PC+ RAR R+ T A+R
Sbjct: 17 SSSPSSPSSSSSEDSSSPMSMPCKR--RARPRTDKSTGKAKR 56
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 266 YVDDHRRMPQALSMDRLIWAANSCGLNCCVPRMTWRELSR 147
+ D + P A S +L+ + N CG+ C +PR +ELSR
Sbjct: 899 FPDMNMAEPTAFSYPKLLESLNICGIRCGLPRWI-KELSR 937
>08_02_1561 + 27880694-27881596
Length = 300
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 11 SWTRSAAPCSPTSCGTTPASSPSGPCRHYXRARTRSS 121
+WTRSAA + + A SPS C H+ + R S
Sbjct: 57 TWTRSAAGATGLAVAFDDALSPSSRCAHHVLHKKRGS 93
>08_02_0878 +
22152437-22152532,22152619-22152718,22152907-22152974,
22153085-22153141,22153243-22153350,22153888-22153971
Length = 170
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 228 GQRLGHPAVIIDICMKQKDGKYLIMKDPNKPLIRLYDIPDNTFESDASEESGDE 389
G G A + ++ G Y ++ DPNK + LYD+ ++SD ++ E
Sbjct: 43 GSSAGGGAEAAKVRFQKIQGAYAVLSDPNKRI--LYDV--GAYDSDGDDDGAGE 92
>03_01_0615 + 4523202-4524518
Length = 438
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 5 DRSWTRSAAPCSPTSCGTTPASSPSGPCRHYXRARTRSSSVTCP 136
D S + A CSP CGT P+SS P A SS CP
Sbjct: 97 DTSADATWAHCSP--CGTCPSSSLFAPANSSSYASLPCSSSWCP 138
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 17 TRSAAPCSPTSCGTTPASSPSGP 85
+R+AAP S S T+P+S+PS P
Sbjct: 94 SRAAAPSSRISAPTSPSSAPSSP 116
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 29 APCSPTSCGTTP-ASSPSGPCRHYXRARTRSSSVTCPA 139
AP +P + G P A++P+GP R A + T PA
Sbjct: 9 APKAPAAAGPAPKATAPAGPARKAPAAAGPAPKATAPA 46
>12_02_0587 +
20835741-20836115,20836183-20836218,20836409-20836617,
20837402-20837498,20837977-20838046,20838224-20838281,
20838914-20839734,20839780-20840121,20840224-20841227
Length = 1003
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = +3
Query: 270 MKQKDGKYLIMKDPNKPLIRLYDIPDNTFE-----SDASEESGDEQADTPFAPLYSYGNS 434
+K GKY++ D N L YD P+ + +A+ SGD+ S GN
Sbjct: 440 LKLVSGKYMLSVDNNGSLALTYDTPEGHSKYWPRNINATPFSGDQPQGLDMLGCISAGNH 499
Query: 435 KRV*NSTLSIQRARELTV 488
R S L R LT+
Sbjct: 500 IRYCASDLGYGVLRRLTL 517
>06_01_1171 - 10007714-10009141
Length = 475
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 75 GELAGVVPQLVGEHGAALRVQ 13
GELAGV+ ++VGE G LR +
Sbjct: 419 GELAGVLREVVGEAGGELRAR 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,701,162
Number of Sequences: 37544
Number of extensions: 250872
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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