Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0680
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 129 3e-31
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 129 3e-31
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 129 3e-31
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 76 5e-15
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 75 8e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 55 7e-09
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.006
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.006
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.010
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.018
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.024
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.13
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.22
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.39
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.7
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 2.7
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 3.6
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 6.3
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 6.3
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 129 bits (312), Expect = 3e-31
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 490
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129
Query: 491 NGQTRE 508
+GQTRE
Sbjct: 130 DGQTRE 135
Score = 105 bits (251), Expect = 6e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1
Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 258
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GK
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 252 GKGSFKYAWVLDKLKAERD 308
GKGSFKYAWVLDKLKAER+
Sbjct: 50 GKGSFKYAWVLDKLKAERE 68
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 511 ALLAFTLGVKQLIVGVNQMDXT 576
ALLA+TLGVKQLIV VN+MD T
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTT 158
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 129 bits (311), Expect = 3e-31
Identities = 58/66 (87%), Positives = 62/66 (93%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 490
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 491 NGQTRE 508
+GQTRE
Sbjct: 130 DGQTRE 135
Score = 105 bits (251), Expect = 6e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1
Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 258
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GK
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 252 GKGSFKYAWVLDKLKAERD 308
GKGSFKYAWVLDKLKAER+
Sbjct: 50 GKGSFKYAWVLDKLKAERE 68
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 511 ALLAFTLGVKQLIVGVNQMDXT 576
ALLA+TLGVKQLIV VN+MD T
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTT 158
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 129 bits (311), Expect = 3e-31
Identities = 58/66 (87%), Positives = 62/66 (93%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 490
GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 491 NGQTRE 508
+GQTRE
Sbjct: 130 DGQTRE 135
Score = 105 bits (251), Expect = 6e-24
Identities = 47/51 (92%), Positives = 49/51 (96%)
Frame = +1
Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 258
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GK
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGK 51
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 252 GKGSFKYAWVLDKLKAERD 308
GKGSFKYAWVLDKLKAER+
Sbjct: 50 GKGSFKYAWVLDKLKAERE 68
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 511 ALLAFTLGVKQLIVGVNQMDXT 576
ALLA+TLGVKQLIV VN+MD T
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTT 158
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 75.8 bits (178), Expect = 5e-15
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 490
G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299
Query: 491 NGQTRE 508
NGQTRE
Sbjct: 300 NGQTRE 305
Score = 49.6 bits (113), Expect = 3e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 118 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 258
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GK
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGK 221
Score = 31.9 bits (69), Expect = 0.073
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 249 NGKGSFKYAWVLDKLKAER 305
+GKGSF YAW+LD + ER
Sbjct: 219 SGKGSFSYAWLLDTTEEER 237
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 74.9 bits (176), Expect = 8e-15
Identities = 32/66 (48%), Positives = 45/66 (68%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 490
G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360
Query: 491 NGQTRE 508
GQTRE
Sbjct: 361 GGQTRE 366
Score = 67.3 bits (157), Expect = 2e-12
Identities = 28/48 (58%), Positives = 39/48 (81%)
Frame = +1
Query: 118 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKD 261
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKE 283
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 55.2 bits (127), Expect = 7e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 469
GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 112 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 198
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 514 LLAFTLGVKQLIVGVNQMDXTEPPYSE 594
LLA +GVKQ++V +N++D EP E
Sbjct: 162 LLARQVGVKQIVVYINKVDMVEPDMIE 188
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 201
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 356 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 451
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 201
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 356 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 451
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.68
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCG 201
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.018
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 311 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.5 bits (73), Expect = 0.024
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +2
Query: 341 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 505
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMR 194
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGI 207
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 359 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 454
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 100 PKMGKEKTHINIVVIGHVDSGKST 171
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 332 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 356 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 368 IIDAPGHRDFIKNMITGTSQADCAVLIV 451
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 371 IDAPGHRDFIKNMITGTSQADCAVLIV 451
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +1
Query: 112 KEKTHINIVVIGHVDS----GKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLG 279
KE ++N+V D S++T + + K GI + +EK + +N L
Sbjct: 288 KENVNLNLVKTPKYDDLTKMNLSSSTANTLIK--GIQSYNFQNYEKAYSLLAAGVTNSLL 345
Query: 280 YWTN*RLSVTXYHNRYCSLE 339
WTN +S Y C ++
Sbjct: 346 EWTNTSVSDKEYLRIQCFIQ 365
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 314 ITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 406
+ I+I + E +++ T+ID PG DFI N
Sbjct: 71 VEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 268 LKDPFPFPGPPSRTSRWYVCQYHHIC 191
+ P P PP +T + Y QY+ +C
Sbjct: 1 MSTPLIPPAPPKKTLQLYTPQYYGLC 26
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 590 LYGGSVXSIWFTPTMSCLTPRVKASKASHGFDRS*RYQLRIH 465
+ G +IW +P + + R K +A HG+ Y L H
Sbjct: 74 IQGMGFTAIWISPIIKNIEGRTKYGEAYHGYWPQDLYTLNPH 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,388
Number of Sequences: 5004
Number of extensions: 46253
Number of successful extensions: 183
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -