Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0679
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    26   4.2  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   9.6  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   9.6  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
 Frame = +2

Query: 203 HEEKSPR-ISQPRSGLCATF----GNVVRVWLGSKLIVFLADADDIE---IILNSHVHID 358
           +E+KSP  ++   +G   T      N   +W    ++++LAD  D E    +   H    
Sbjct: 39  NEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYY 98

Query: 359 KATEYKFFKPWLGEGLLISSGPKWRS--HXXMI--APTFHINILKSFVGI 496
           K  +Y FF+   G+G++      W S  H  ++  A T + N +K  +G+
Sbjct: 99  KVIQYLFFQA-SGQGIIWGQA-GWFSVYHQELVISAITRYRNEIKRVLGV 146


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 98  IWILYRWQQNSHMHKLAELLPGPAPIPIFGNAL 196
           I   +R Q+NSH    +  L  P   P FG  L
Sbjct: 575 IGFTFRHQKNSHPTSSSSALSSPLSAPSFGTLL 607


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 263 NVVRVWLGSKLIVFLADADDIEIILNSHVHIDKATE 370
           N   V L S++I  ++  +D+E+I+NS     K  E
Sbjct: 759 NEESVCLLSRIIAVISKEEDLELIINSFTCAQKPVE 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,455
Number of Sequences: 5004
Number of extensions: 64146
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)