Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0678
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 29 0.77
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.3
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 27 2.3
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 27 2.3
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 26 5.4
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 7.2
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 9.5
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 9.5
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.77
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 284 GQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWFRAVDKDQSGFITSTELRSALVNA 463
G+ A+GG L+ GP + V G I + W + SG + +TEL S V +
Sbjct: 304 GRQAWGGFSREALK-NWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELASMSVLS 362
Query: 464 QGQTFSETACNLMIGCSTKTAT--GRLI 541
T S + NL G + AT G LI
Sbjct: 363 ---TTSTLSYNLAFGVAAAAATRVGNLI 387
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 289 LSWISGIVGHLYVSLNVYVATMLPCLLINCY 197
L WI IVG ++ L V+ LP ++I Y
Sbjct: 239 LYWIDVIVGGFFIILFVFTPETLPAIVIQRY 269
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSE 484
+V++ F+ DKD +G+IT EL L + G+ S+
Sbjct: 86 EVREAFKVFDKDGNGYITVEELTHVLTSL-GERLSQ 120
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNL 499
+ ++ F D+DQ G ITS EL ++ + GQ S TA L
Sbjct: 13 EFREAFSLFDRDQDGNITSNEL-GVVMRSLGQ--SPTAAEL 50
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 392 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGCSTKTATG 532
FR DKD SG+I + + + + G+ S+ LM+ + T +G
Sbjct: 84 FRVFDKDNSGYIETAKF-ADYMKTLGEKLSDNEVQLMVQEADPTNSG 129
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 25.8 bits (54), Expect = 5.4
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +1
Query: 295 LRWNATRPIRNWTWTVPFHWSWGYYYAPSTAVVPSCR*RSIWIHYFDRTKISVGERSRSN 474
LR++A I NWTW P G P P C D I G + +
Sbjct: 6 LRYHA---IANWTWDTPKDDVCGICRVPFDGCCPQCTSPG------DNCPIVWG-KCKHI 55
Query: 475 FFRNCLQSDDWLFDKDRNGQINLD 546
F +C+Q +WL GQ +D
Sbjct: 56 FHAHCIQ--NWLATSGSQGQCPMD 77
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 7.2
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +1
Query: 88 GCNKIHLSLLYRRPLIRSVSKLSNLKTFHKNKYKFFNSS*LIDTEALLQHRHLARHTNGL 267
GC+ LLYRRP ++S + H +N + L D +LQ R+ A N
Sbjct: 825 GCSDFIKELLYRRPFSYTLSYVCEQIPDH------WNLNLLADFLCILQKRN-AERLNES 877
Query: 268 QFRISRTGSLRWN 306
Q R++ SL N
Sbjct: 878 QTRLTLEKSLSQN 890
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 124 RPLIRSVSKLSNLKTFHKNKYKFFNSS 204
RP+ +S S++S L+ F+K K F++S
Sbjct: 34 RPIQKSFSEISILRVFNKPPIKKFHNS 60
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 254 IQMAYNSGYPGQAAYGG 304
+Q Y+ GYPG YGG
Sbjct: 61 MQNKYSEGYPGARYYGG 77
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 421 IHYFDRTKISVGERSRSNFFRNCLQSDDWLFDKDRNGQI 537
IHY D K+ +GE +S R C + KD+ G +
Sbjct: 65 IHYRD-DKLFLGEYPKSRLLRVCYDDNGTFKVKDKRGLV 102
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 311 PGQLEIGHGPYPSIGVGGTITP 376
P L +GH P PS ++TP
Sbjct: 207 PSNLPLGHPPPPSDSANSSVTP 228
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +3
Query: 54 HQKY*SLNFSLRLQQNTFVVTIPP----STNKICI 146
H Y LNFSLR +N ++ P S N +CI
Sbjct: 42 HGHYCLLNFSLRENKNYLIIVYLPIEGFSANHMCI 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,868
Number of Sequences: 5004
Number of extensions: 58627
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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