Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0678
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006676-5|AAK71383.2| 172|Caenorhabditis elegans Hypothetical ... 49 3e-06
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 33 0.18
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 33 0.18
AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical... 33 0.18
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 32 0.41
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n... 31 0.71
AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math ... 29 2.2
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain (pr... 29 2.9
U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain (pr... 29 2.9
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 29 2.9
Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical pr... 28 6.6
U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF099917-5|AAC68783.2| 219|Caenorhabditis elegans F-box a prote... 27 8.7
AF078783-5|AAC26922.1| 236|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC006676-5|AAK71383.2| 172|Caenorhabditis elegans Hypothetical
protein M04F3.4 protein.
Length = 172
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 374 PQVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGCSTKTATGRL 538
P +QQ F +VDKD+SG I+S EL++AL N F+ C LMIG G +
Sbjct: 6 PNLQQIFSSVDKDRSGQISSDELQTALSNGTWNPFNPETCRLMIGMFDSNGDGAI 60
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 549 FDKLYTYVNPWVAVFQTYDTGSIWFIDEGE 638
F L+ Y+N W F+ +DT ID+ E
Sbjct: 65 FQALWRYINDWTNCFRGFDTDGSGNIDKSE 94
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +2
Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
++++ FR DKD +GFI++ ELR + N G+ ++ + MI
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI 126
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +2
Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
++++ FR DKD +GFI++ ELR + N G+ ++ + MI
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI 126
>AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical
protein Y73B3A.12 protein.
Length = 116
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +2
Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 505
++++ FR DKD +GFI++ ELR + N G+ ++ + MI
Sbjct: 34 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI 75
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/69 (33%), Positives = 26/69 (37%)
Frame = +2
Query: 266 YNSGYPGQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWFRAVDKDQSGFITSTELR 445
Y GY G YGG PP Q + G P Q +QW R D I E
Sbjct: 246 YWDGYQG---YGGPPPSQQQQQQGGGPVTAPQSMQMAQQEQWGRVGTNDLMNVIAQVEKS 302
Query: 446 SALVNAQGQ 472
SA A+ Q
Sbjct: 303 SAECKARIQ 311
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 260 MAYNSGYPGQAA-YGGMPPGQLEIGHGP 340
M GYP Q A YGG+PP +GP
Sbjct: 115 MMRQGGYPNQMAMYGGVPPPHYPSSNGP 142
>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 20
protein.
Length = 1254
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/45 (44%), Positives = 20/45 (44%)
Frame = +2
Query: 257 QMAYNSGYPGQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQW 391
QM GYPGQ Y GMPP Q G P GG Q Q W
Sbjct: 711 QMVQQPGYPGQ-GYPGMPPPQGAFPPGYLP----GGAQPTQQQIW 750
>AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math
domain containingprotein 25 protein.
Length = 364
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QVQQWFRAVDKDQSGFITSTELRSALVNAQ 466
++++ F+ +DKD GFI+ EL++ + N Q
Sbjct: 280 EIRKVFQDLDKDGDGFISVAELQAVMTNLQ 309
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +2
Query: 281 PGQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWF 394
P YGGMPPG IG GP P GG+ QQ F
Sbjct: 45 PPANGYGGMPPGPPNIG-GPQPP---GGSQQKGQQQQF 78
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +2
Query: 281 PGQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWF 394
P YGGMPPG IG GP P GG+ QQ F
Sbjct: 45 PPANGYGGMPPGPPNIG-GPQPP---GGSQQKGQQQQF 78
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 380 VQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSE 484
+++ FR D+D +GFIT+ E R + + G FS+
Sbjct: 109 IREAFRVFDRDGNGFITADEFRYFMTH-MGDQFSD 142
>U80443-6|AAK68201.1| 643|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform b protein.
Length = 643
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 248 RDIQMAYNSGYPGQAAYGGMPPGQLEIGHGP-YPSI 352
++I++ + Y GQ G P G L GHGP PSI
Sbjct: 276 KEIRLTLSENYRGQITAAGTPTGTLN-GHGPGSPSI 310
>U80443-5|AAD32269.1| 635|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 4,
isoform a protein.
Length = 635
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 248 RDIQMAYNSGYPGQAAYGGMPPGQLEIGHGP-YPSI 352
++I++ + Y GQ G P G L GHGP PSI
Sbjct: 268 KEIRLTLSENYRGQITAAGTPTGTLN-GHGPGSPSI 302
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 380 VQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSE 484
+++ FR D+D +GFIT+ E R + + G FS+
Sbjct: 109 IREAFRVFDRDGNGFITADEFRYFMTH-MGDQFSD 142
>Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical
protein T07G12.1 protein.
Length = 182
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 392 FRAVDKDQSGFITSTELRSALVNAQGQTFSE 484
F+ DKD +G+IT+ E + + G+ FSE
Sbjct: 101 FKVFDKDGNGYITAQEFKH-FMTTMGERFSE 130
>U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical
protein M03E7.2 protein.
Length = 122
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 296 YGGMPPGQLEIGHGPYPSIGVGG 364
YGGMPP G PY G+GG
Sbjct: 53 YGGMPPPMPPPGMSPYGMGGMGG 75
>AF099917-5|AAC68783.2| 219|Caenorhabditis elegans F-box a protein
protein 24 protein.
Length = 219
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 330 DMDRTLPLELGVLLRPKYSSGSEL*IKINLDS 425
D ++ P+E+ + +P Y+ G+E I+ ++D+
Sbjct: 166 DKSKSNPIEIAKVFKPDYAGGNEFLIEYSIDN 197
>AF078783-5|AAC26922.1| 236|Caenorhabditis elegans Hypothetical
protein H10E21.4 protein.
Length = 236
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 380 VQQWFRAVDKDQSGFITSTEL 442
VQQ F +DK+Q G++T EL
Sbjct: 196 VQQIFAMLDKNQDGYLTENEL 216
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,526
Number of Sequences: 27780
Number of extensions: 327516
Number of successful extensions: 878
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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