Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0676
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    28   1.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   1.9  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   1.9  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.9  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   7.8  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   7.8  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 243 FSRKIVLQQLRSILQEGIFNSNLRGSKTITNYDIIYTMRNN 365
           + R + L  LR   +  + N+N    +  ++Y ++YT +NN
Sbjct: 829 YMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNN 869


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 180 FLKVRPFSTCFHSIVSHFVSNSQEDFKITSNYYLY*FINYLGMYIL 43
           F+ + PF   + S +    S ++E+       Y Y F+N+  +Y++
Sbjct: 506 FISISPFLFRWLSSMQGLSSRAEEEIYAVGKNYAYLFVNFFLVYVI 551


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 446 ISRNYIL*YYTRRREGSDNEQKRTHIDVIKLIDEADEVSQIK 571
           I+ NY + Y T     +  + K +  D+I L+ +  E SQIK
Sbjct: 793 IASNYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEFSQIK 834


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = -2

Query: 201 VHHVRYFFLKVRPFSTCFHSIVSHFVSNSQEDFKITSNYYLY*FINYLGMYIL 43
           +HHV  +    +       + V H+V+NS E +       +   I  + MY++
Sbjct: 174 IHHVMLYQYYPKSLQEALWAAVEHYVNNSGEAYSTVQKLAVQKKIGNIRMYLV 226


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 405 LDQIDNKSQVNVTTSAETIYSN-IILEDEKDPTMN 506
           +D   N S   +T   E I  N I+L+DE+DPT N
Sbjct: 859 VDDGANLSDSFLTEVYEEIQKNEIVLKDEQDPTSN 893


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 587 NRSHRILSDSLHQLRLLVLSHQYVFSFVHCRILLVF*YNI 468
           NRS  +     + L L +L     F F  CR    F Y++
Sbjct: 235 NRSKELAHQKFYLLHLSLLREYLEFEFQECRSTFTFKYDL 274


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 TFSRKIVLQQLRSILQEGIFNSNLRGSKTITNYDIIYTMRNNTVKL 377
           TFS K+ L+ + + LQ GI+  N+  +  +T Y    T+  +T  +
Sbjct: 276 TFS-KLALRNVTTALQPGIYEMNITYNFPVTEYKGTKTIMFSTTSV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,551
Number of Sequences: 5004
Number of extensions: 49712
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)