Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0676
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X84003-1|CAA58827.1|  124|Homo sapiens PolII transcription facto...    33   0.96 
BX679664-8|CAH71330.1|  124|Homo sapiens TAF13 RNA polymerase II...    33   0.96 
BC121181-1|AAI21182.1|  124|Homo sapiens TAF13 RNA polymerase II...    33   0.96 
BC121180-1|AAI21181.1|  124|Homo sapiens TAF13 RNA polymerase II...    33   0.96 

>X84003-1|CAA58827.1|  124|Homo sapiens PolII transcription factor
           TFIID protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 172 FQKEISNMMHGFGDNPNPNAATVLLVEKL 258
           F KE+  MM+GFGD+ NP   +V ++E L
Sbjct: 32  FSKELRCMMYGFGDDQNPYTESVDILEDL 60


>BX679664-8|CAH71330.1|  124|Homo sapiens TAF13 RNA polymerase II,
           TATA box binding protein5 (PGRM) (PGM5) protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 172 FQKEISNMMHGFGDNPNPNAATVLLVEKL 258
           F KE+  MM+GFGD+ NP   +V ++E L
Sbjct: 32  FSKELRCMMYGFGDDQNPYTESVDILEDL 60


>BC121181-1|AAI21182.1|  124|Homo sapiens TAF13 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 18kD
           protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 172 FQKEISNMMHGFGDNPNPNAATVLLVEKL 258
           F KE+  MM+GFGD+ NP   +V ++E L
Sbjct: 32  FSKELRCMMYGFGDDQNPYTESVDILEDL 60


>BC121180-1|AAI21181.1|  124|Homo sapiens TAF13 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 18kD
           protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 172 FQKEISNMMHGFGDNPNPNAATVLLVEKL 258
           F KE+  MM+GFGD+ NP   +V ++E L
Sbjct: 32  FSKELRCMMYGFGDDQNPYTESVDILEDL 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,651,350
Number of Sequences: 237096
Number of extensions: 1495963
Number of successful extensions: 7317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7317
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)