Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0676
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.4  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/38 (18%), Positives = 22/38 (57%)
 Frame = +3

Query: 246 SRKIVLQQLRSILQEGIFNSNLRGSKTITNYDIIYTMR 359
           +R ++   L +++++ +  +     KT+T  D++Y ++
Sbjct: 55  TRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALK 92


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 120 NSQEDFKITSNYYLY*FINYLGMY 49
           N+Q+  +   NYY   +  Y G Y
Sbjct: 706 NAQQQVQAVRNYYANLYTKYHGQY 729


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 289 SCRILLSCCKTIFLLKVPLQR*GS--GYL 209
           SC ++L  CK I++  + L   G   GYL
Sbjct: 175 SCPLILGSCKCIYVQSINLCMAGRLFGYL 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,722
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)