Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0675
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   10.0 
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   10.0 

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 303 IF*FAWCHDIIIIYIRTVCMK---SLMLCLILFS 211
           IF + WCH ++ I  +T+ +K   SL+  LI F+
Sbjct: 325 IFFWVWCHSLLYIVPKTLPIKPLSSLLFVLISFT 358


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 5   YCMPGASCTHILNKILNV-THCPNTTIIIMIGRRGNADIRDIKYQINQLLTLQVKKIIMF 181
           +  P + C  +++ +++V T C +  ++ ++      +I D +    QLL     +I  F
Sbjct: 461 WMFPLSECQDVVDALIDVATQCLDN-LLSVLPNEDLMEIADKRPSYRQLLYNCCVEISQF 519

Query: 182 AFPFIQSMPAENKIRHSIN 238
           +     +  +ENK + SIN
Sbjct: 520 SREDFSNSLSENKTKDSIN 538


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 223 YFIFCWHTLNKWKCKHDDL 167
           ++ +C+H+LNK + K  DL
Sbjct: 190 WYSYCYHSLNKLQSKKTDL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,497
Number of Sequences: 5004
Number of extensions: 50158
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)