Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0675
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269... 34 0.12
12_02_0348 - 17816851-17817387 32 0.48
12_02_0345 - 17767704-17768240 32 0.48
10_03_0030 - 7202513-7203134,7204657-7204784 31 0.84
05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858... 30 1.9
04_03_0537 + 16887793-16888176 29 2.6
04_03_0811 - 19909128-19912214 29 4.5
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 28 7.8
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561... 28 7.8
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 28 7.8
>09_01_0184 +
2693576-2693578,2694157-2694952,2695169-2695249,
2695454-2695793,2695799-2696258,2696404-2696526,
2696532-2697266
Length = 845
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 570 LLQEVNSVVLGFNLNYLERIPINKCHIFFLLK 475
+L+EVNS+V N N+ E + KC IF LL+
Sbjct: 735 ILEEVNSLVAQLNPNFCENFILPKCSIFVLLR 766
>12_02_0348 - 17816851-17817387
Length = 178
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 615 KNHYLWMGCVQINHV--LLQEVNSVVLGFNLNYLERIPINKCHIFFLLK 475
KN + G + +H + QEVNS+ N N+ E + KC F LL+
Sbjct: 67 KNDQAYYGPITCSHTRKIQQEVNSLFAQLNPNFSENFILPKCSTFVLLR 115
>12_02_0345 - 17767704-17768240
Length = 178
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 615 KNHYLWMGCVQINHV--LLQEVNSVVLGFNLNYLERIPINKCHIFFLLK 475
KN + G + +H + QEVNS+ N N+ E + KC F LL+
Sbjct: 67 KNDQAYYGPITCSHTRKIQQEVNSLFAQLNPNFSENFILPKCSTFVLLR 115
>10_03_0030 - 7202513-7203134,7204657-7204784
Length = 249
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 615 KNHYLWMGCVQINHV--LLQEVNSVVLGFNLNYLERIPINKCHIFFLLK 475
KN + G + +H + QEVNS+ N N+ E + KC F LL+
Sbjct: 84 KNDQAYHGPIMRSHARKIQQEVNSLFAQLNPNFSENFILPKCSTFVLLR 132
>05_03_0118 -
8586731-8587220,8587331-8587846,8588842-8588906,
8589483-8589989
Length = 525
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 612 NHYLWMGCVQINHV--LLQEVNSVVLGFNLNYLERIPINKCHIFFLLK 475
N ++G + N + QEVNS+ N N+ E + KC I LL+
Sbjct: 70 NDQTYLGLITCNRARKIHQEVNSLFTHLNPNFSENFILPKCFILVLLR 117
>04_03_0537 + 16887793-16888176
Length = 127
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 615 KNHYLWMGCVQINHV--LLQEVNSVVLGFNLNYLERIPINKCHIFFLLK 475
KN + G + N + QEVNS+ N N+ E + KC F LL+
Sbjct: 49 KNDQAYHGPITRNRARKIQQEVNSLFTQLNPNFSENFILPKCSTFVLLR 97
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 23 SCTHILN-KILNVTHCPNTTIIIMIGRRGNADIRDIKYQINQLLTLQVKKIIMFAFP 190
S H+ N ++L++ C N + RGN + K +N LL L + ++ + FP
Sbjct: 366 SVWHLFNLRLLSLRGCTNLKSLCNFSNRGNTLSPNDKCHVNNLLYLDLTQLNINIFP 422
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 573 VLLQEVNSVVLGFNLNYLERIPINKCHIFFL 481
++ QE+NS+ N N+ E + KC IF L
Sbjct: 818 IIQQELNSLFAQLNPNFSENFILPKCSIFVL 848
>08_01_0649 +
5607234-5608397,5609358-5609513,5609598-5609796,
5612419-5613608,5614505-5614660,5614742-5615041
Length = 1054
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 603 LWMGCVQINHVLLQEVNSVVLGFNLNYLERIPINKCHI 490
L GC + + L+++ S+ G + L+R+ I CH+
Sbjct: 679 LCSGCTSLEELELKDIKSLWGGIQSDSLKRLSIINCHV 716
>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 307 FYTIDINCMIKNKCIIMTKPNKY 375
+YTI + CMI+N + + + N+Y
Sbjct: 1189 YYTISMTCMIENDMVAVERVNQY 1211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,364
Number of Sequences: 37544
Number of extensions: 266776
Number of successful extensions: 440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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