Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0672
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   101   1e-22
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   100   1e-22
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    29   0.72 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.9  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  101 bits (241), Expect = 1e-22
 Identities = 47/84 (55%), Positives = 55/84 (65%)
 Frame = +1

Query: 1   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKECIPF 180
           M RYS  P    K  KARG+ LR HFKN+ E A     M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 181 RRFNGGVGRCAQAKQFGTTQGRWP 252
           RRFNGGVGR AQ K+FG TQ RWP
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWP 84



 Score =   99 bits (238), Expect = 3e-22
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = +3

Query: 255 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCH 434
           KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP H
Sbjct: 86  KSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSH 145

Query: 435 IEVCLSEREDAVARVAPT 488
           IE+ ++E E+AV +   T
Sbjct: 146 IEIIVAEEEEAVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  100 bits (240), Expect = 1e-22
 Identities = 48/89 (53%), Positives = 56/89 (62%)
 Frame = +1

Query: 1   MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKECIPF 180
           M RYS  P    K  KARG+ LR HFKN+ E A     M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 181 RRFNGGVGRCAQAKQFGTTQGRWPKNPPN 267
           RRFNGGVGR AQ K+FG TQ RWP    N
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVN 89



 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 44/78 (56%), Positives = 58/78 (74%)
 Frame = +3

Query: 255 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCH 434
           KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP H
Sbjct: 86  KSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSH 145

Query: 435 IEVCLSEREDAVARVAPT 488
           IE+ ++E E+AV +   T
Sbjct: 146 IEIIVAEEEEAVPKANDT 163


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 329 QASYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 448
           Q+ +   S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 238 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 155
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 61  NLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEK-KECI 174
           NLRV  K T ++ ++    P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,145
Number of Sequences: 5004
Number of extensions: 46911
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)