Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0672
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   130   6e-31
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   118   3e-27
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical p...    27   8.2  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  130 bits (315), Expect = 6e-31
 Identities = 69/105 (65%), Positives = 78/105 (74%), Gaps = 3/105 (2%)
 Frame = +3

Query: 228 WHNT-GSLAQKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 404
           W+ T G    KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGR
Sbjct: 78  WNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGR 137

Query: 405 INPYMSSPCHIEVCLSEREDAVARVAPTDDA--PAKKSFPRKSLR 533
           INPYMSSPCHIEV L+E+ED V++  PTDDA    KK   RK  R
Sbjct: 138 INPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRKQRR 180



 Score =  128 bits (309), Expect = 3e-30
 Identities = 57/81 (70%), Positives = 66/81 (81%)
 Frame = +1

Query: 10  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKECIPFRRF 189
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 190 NGGVGRCAQAKQFGTTQGRWP 252
           +GG+GR AQ KQ+ TTQGRWP
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWP 86


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  118 bits (284), Expect = 3e-27
 Identities = 61/89 (68%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
 Frame = +3

Query: 273 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 452
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 453 EREDAVARVAPTDDA--PAKKSFPRKSLR 533
           E+ED V++  PTDDA    KK   RK  R
Sbjct: 126 EKEDVVSK--PTDDAAPKVKKESKRKQRR 152



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = +1

Query: 10  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAXRKMPLRRAVRYLKNVIEKKECIPFRRF 189
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 195 AVEATEWNTLFLFN--HVFEVTNSTTERHLSXCHCGLICVLKVN 70
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 435 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 307
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/48 (27%), Positives = 31/48 (64%)
 Frame = -2

Query: 334 SLSTSKVLLSAFDSAFLNNCKRNSADFWASDPVLCQTALLEHSDQRRR 191
           +L++++ +++ F+S  ++  K+  A   A+ PV  + A  E+S+Q+R+
Sbjct: 35  NLASAEKIMAQFESGAVHTNKKKQAQNGAAKPVAHKPANPENSNQKRQ 82


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 201 WSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESNADNKTL 320
           WSLC +  V     S +  S + LL  L+++E+ +D+K +
Sbjct: 397 WSLCVNSKVHCELISFSTTSNQCLLSTLKSSETASDSKKI 436


>U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical
           protein F25B5.2 protein.
          Length = 757

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 174 SIPSLQRRRWSLCSSKAVWHNTGSLAQKSAEFLLQLLRNAESNADNK-TLDVDRLVIDHI 350
           ++  L+  R  LC S   W     + + S   +  +   +E   D+K T+D   L++D I
Sbjct: 630 NLDHLRNVRSGLCKSIEEWKRITKMRESSTMLIYPMFCQSEEEWDSKGTIDAIFLMLDGI 689

Query: 351 QVN 359
            +N
Sbjct: 690 LMN 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,411
Number of Sequences: 27780
Number of extensions: 278595
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)