Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0670
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 31 0.14
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 31 0.18
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 30 0.31
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 30 0.42
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 29 0.73
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 28 1.7
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 27 2.2
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 26 5.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 5.1
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 5.1
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 6.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 9.0
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.14
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Frame = +2
Query: 257 VTPLKREGTFTKDGPELDSESKKAASVTPKHTPVKRM----------SLPSPGSTPFPNK 406
V+PLK + D L +S +S T KH P ++ ++ S P P+
Sbjct: 16 VSPLKAKAMSPDDVSRLFCKSS-TSSATRKHDPFHKLWDRLQPKAQSTIQRTSSLPVPSS 74
Query: 407 SSQKERLLNI-----TRSIEKSRRSSLVEVVPRTTKVMFAVQLITQLFSVSREKRL 559
S+ KERL NI +R++E S E + ++V V +I Q ++ R+K L
Sbjct: 75 SNFKERLNNIGGLKRSRTLESSYEDE-TETANKLSRVSSLVSVIRQ--TIDRKKSL 127
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 311 SESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSSLVEVVPR 490
S+ + V T SL P + P+P S L N+ ++EKS S L +V
Sbjct: 285 SDDPLSLEVANSETVSTSNSLHDPSAEPYPVNRSSLSNLRNLGLALEKSYASLLSKVANH 344
Query: 491 TTK 499
T K
Sbjct: 345 TAK 347
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 254 TVTPLKREGTFTKDGPELDSESKKAASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLN 433
T+TP + + T D DS S A+S +T V S S +TP PN+ SQ++ L++
Sbjct: 152 TLTPSTTDSSST-DVSSSDSVSTSASSSNASNT-VSVTSPASSSATPLPNQPSQQQFLVS 209
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.9 bits (64), Expect = 0.42
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +2
Query: 434 ITRSIEKSRRSSLVEVVPRTTKVMFAVQLITQLFSVSREKRLLS-QT*RGS-NKSFVVEE 607
+ + +EKS L E + TK V+ + L + LL +T G + +E
Sbjct: 2253 VVQLLEKSSSFELCEHILNVTKEWVIVKRDSFLTVKEKTALLLKMRTFEGRFDNKLYIEA 2312
Query: 608 NELKFTIYRPQAFVHFRATLKMREP--NANASRETAV 712
+L TIYR F H T ++++ A AS++T +
Sbjct: 2313 CDLLSTIYRDPIFAHTELTARLKQAFLLATASKDTKI 2349
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 29.1 bits (62), Expect = 0.73
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 392 PFPNKSSQKERLLNITRSIEKSRRSSLVEVVPRTTKVMFAVQLITQLFSVSREKRLLS 565
P + SS + R+ NIT +K R L +PR T V+ + T + SVSR R S
Sbjct: 271 PLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLDE--TLIHSVSRGSRTTS 326
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 565 SNLKGIKQEFCC*RERAEIHDLPPASVRTLQSD 663
SN+K I Q F C +A + DLP +T+ D
Sbjct: 925 SNMKEIIQRFACITPKAVVVDLPELFCKTIPRD 957
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.5 bits (58), Expect = 2.2
Identities = 33/123 (26%), Positives = 50/123 (40%)
Frame = +2
Query: 329 ASVTPKHTPVKRMSLPSPGSTPFPNKSSQKERLLNITRSIEKSRRSSLVEVVPRTTKVMF 508
ASV+ TPVK ++ SP S N+SS L + + RSS V P + +
Sbjct: 226 ASVSGDPTPVKVLNTTSPKSENPLNQSSFLS-FLGENLKPKFTSRSSSVYASPIKSSLNS 284
Query: 509 AVQLITQLFSVSREKRLLSQT*RGSNKSFVVEENELKFTIYRPQAFVHFRATLKMREPNA 688
+ L SV + + S + SNKSF N + + + F + P
Sbjct: 285 LECNPSNLLSVRKNFQQSSDSYLKSNKSFDQLNNLVGLSTGNSENFTPENNSFSWTHPKK 344
Query: 689 NAS 697
N+S
Sbjct: 345 NSS 347
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 446 IEKSRRSSLVEVVPRTTKVMFAVQLITQLFSVSREKRL 559
+ K R+S LVE+ P+ K VQ+ S + +KR+
Sbjct: 95 LSKKRKSKLVEMTPKGLKKRKRVQIQEGSVSTNTKKRM 132
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 369 DMRLTGVCLGVTDAAFLLSESNSGPSLVKVPS 274
+M L C V A LL + + GP LV VPS
Sbjct: 576 EMGLGKTCQVVAFFALLLEQGHHGPHLVVVPS 607
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 404 KSSQKERLLNITRSIEKSRRSSLVEV 481
KS Q+ER+LN+ + S+R SLV++
Sbjct: 449 KSDQRERMLNVDQCF-TSKRRSLVDI 473
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/29 (27%), Positives = 21/29 (72%)
Frame = +1
Query: 607 ERAEIHDLPPASVRTLQSDAEDARAKRKR 693
E+ E+ D P ++LQSD+++ ++++++
Sbjct: 324 EKEEVADAPTLEKKSLQSDSKNKKSQKRK 352
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 543 LTENSWVINWTANITFVVLGTTSTKEDRLLFSIDRVIFNNLS 418
L E V++ T N + +GTTS + +L +I + IFN+L+
Sbjct: 598 LQEKCDVLHTTFNQLDLYVGTTSVGKSSVLDNILKRIFNSLT 639
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 377 SPGSTPFPNKSSQKERLLNIT--RSIEKSRRSSLVEVVPR 490
SPG T P + +ERL N T +IE+ ++ + ++P+
Sbjct: 257 SPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPK 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,503
Number of Sequences: 5004
Number of extensions: 47541
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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