Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0669
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 33 0.031
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.16
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 28 0.87
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.0
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 2.7
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 3.5
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 25 6.1
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 6.1
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 8.1
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.7 bits (71), Expect = 0.031
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +2
Query: 266 QNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIK--GMYEHE-LQDARKLL 436
+ L+ RL K++ ES++S L +++ QE E+SN+K M + + + + L
Sbjct: 923 EELHIRLDKLTGKLKIEESKSSDLGKKLTARQE----EISNLKEENMSQSQAITSVKSKL 978
Query: 437 DDTSREKAKLEIDLKRL 487
D+T + +KLE D++ L
Sbjct: 979 DETLSKSSKLEADIEHL 995
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.3 bits (65), Expect = 0.16
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +2
Query: 257 DALQNLND-----RLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQD 421
D L +ND + + +++R LE+ ++RE + + + SN + YE+E++
Sbjct: 230 DYLSKVNDVEQSQNVKVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQ 289
Query: 422 ARKLLDDTSRE 454
+ LD+ S E
Sbjct: 290 LQNRLDELSEE 300
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 27.9 bits (59), Expect = 0.87
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Frame = +2
Query: 266 QNLNDRLAAYIDKVRQLES---ENSGLRREIQ--TTQEVVTREV--SNIKGMYEHELQDA 424
QNL L+ Y++ +++LE+ EN+ + E++ + +++ + +K +E +
Sbjct: 9 QNLQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNV 68
Query: 425 RKLLDDTSREKAKLEIDLK 481
+ LD ++E A+LE K
Sbjct: 69 KTRLDFINKEIARLENQTK 87
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 284 LAAYIDKV-RQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKL 433
++A +D V R +ESE+ ++ TRE+S I + EH+L+ A K+
Sbjct: 1445 ISASLDDVERSIESEDFQSVGDVNVKVNRNTREISFIYNVDEHKLEMAIKI 1495
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 394 FNVGNLAGDHLLCGLYFTT*SRILTLQLAYFIDIGSQPVV 275
F G+LAG C ++FT ++ ++LAY + G P +
Sbjct: 120 FLSGSLAGT---CSVFFTYPLELIRVRLAYITNTGKNPTL 156
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = -3
Query: 151 CSDDTTLAFDEDV----TVFLVFVYLVGYI 74
C+D +L E + T++L VY++GYI
Sbjct: 319 CTDSVSLLITEPIVVCFTLYLTVVYIIGYI 348
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 345 SRRNPEFSLSNWRTLSI*AANLSLRFCNASSLAN 244
SR+N LSN RT+ + +A + + C +S+ N
Sbjct: 187 SRQNGSVGLSNERTILLQSAFMPAKACLCASILN 220
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 229 GLSGLLGRPAELEGRLPTGVLDCSGLCSD 143
G+ + R +L LPTG ++CSG D
Sbjct: 715 GIRDRMYRSGDLGRYLPTGNVECSGRADD 743
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 92 ILSGIHFCHNNKL*H 48
+L GI FCH N++ H
Sbjct: 110 LLKGISFCHENRVLH 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,213
Number of Sequences: 5004
Number of extensions: 36629
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -