Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0669
         (489 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.34 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   2.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   3.2  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 263 LQNLNDRLAAYIDKVRQLESENSGLRRE 346
           LQN+  +L   ++++R    EN+ LRRE
Sbjct: 110 LQNIGAQLTTALEELRLCREENAALRRE 137


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 254  EDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQE---VVTREVSNIKGMYEHELQDA 424
            ++ ++ +    AA+   V Q+E E +  RRE+Q   +    + + ++NI+   E      
Sbjct: 877  KEKIELMKQEKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRIESMKSKR 936

Query: 425  RKLLDDTSREKAKLEI 472
            + +L     E  ++ +
Sbjct: 937  QTILMQAKMESIEIPL 952


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +2

Query: 233 QAKPFAREDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHE 412
           QAK  A E  ++N ++R+       RQ+E +     R+  +  E   + V   K   +  
Sbjct: 395 QAKQAAIERGMRNASERVTRIQKDARQIEQDLQERNRDGLSQVEQRKQAVETEKAQLKER 454

Query: 413 LQDARKLLDDTSRE 454
             +   ++    RE
Sbjct: 455 NDELASMIASAQRE 468


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 318  RVRIRDYVV--KYKPHRRWSPARF--PTLKECTSMNSKMP 425
            R R+ D ++  K++PH  W P  +  P   E T +++K+P
Sbjct: 1732 RKRLGDCMIAAKFEPHDNWLPPCYYVPKELEQTLIDAKIP 1771


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,428
Number of Sequences: 2352
Number of extensions: 8923
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)