Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0668
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   8.9  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    25   8.9  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    25   8.9  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +3

Query: 291 VAASIQYLAMGAYFS-IDTVN--RPGFANYSSMLRLKN----ASTRPSSLTTCS*GES*Q 449
           V+ S++    G  F  I+  N   PG++  SSM    N    A+T P+S T+ +  E  Q
Sbjct: 342 VSGSLKLTPQGTGFDCINPANPFSPGYSGKSSMKSDDNVGSSANTAPNSPTSANSSEGNQ 401

Query: 450 AP*PTSSRTGPP 485
              PT+    PP
Sbjct: 402 GNGPTTYPIKPP 413


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 350 PPRLRELFFDAATEEREHATKLIDYLLMRGKLTGSVTDLI 469
           PP  R L FD         +  ++ L+MR    G +T +I
Sbjct: 290 PPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVI 329


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 656 ALVLFVEEFPGQIVDQVGSR*KLLSQVLMTSRMLLVTSLSSLRACSRADGRSPTTCLR 483
           AL   V  FP   V  V      +  + +    LL+     L +  + +GRSP TC +
Sbjct: 143 ALFQLVRAFPEAQVPHVEKSVDPVRDLQIIQEELLLKDAEFLESYLKKEGRSPKTCAK 200


>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 481 PRKHVVGERPSALEHALKLESDVT 552
           PRK+V+   P A+EH  K++S  +
Sbjct: 78  PRKNVIKLTPLAVEHLKKMQSSAS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,226
Number of Sequences: 5004
Number of extensions: 51240
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)