Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0668
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    32   0.43 
02_04_0551 + 23801464-23801802                                         32   0.57 
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    31   1.3  
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520     29   5.3  
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011...    28   7.0  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    28   7.0  
06_03_1089 - 27521291-27522124                                         28   9.3  

>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 365 ELFFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPANTSWESGHQPSSTP 529
           + F +++ EER+HA KLI Y  MRG   +L   VT L  +  P       G   S+ P
Sbjct: 160 KFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHPEKGDALYGELLSACP 217


>02_04_0551 + 23801464-23801802
          Length = 112

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +1

Query: 274 NRSRRKWPRQSST*PWGLTSRSIR*TAPASRTILRCCD*RTRARDQAH*LPA--HEGKAD 447
           +RSRR W R+    PW    R  R  A   RT   C +   R  D     PA    G A 
Sbjct: 33  SRSRRHWRRRREPRPW---RRRQRGAAGGGRTWTTCGEVEQRRWDGNGEFPALVDSGCAY 89

Query: 448 RLRNRP--HHVQGPR 486
           R R RP  +H  GPR
Sbjct: 90  RARIRPTNNHKTGPR 104


>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 365 ELFFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAP 484
           + F +++ EER+HA KL+ Y  MRG   +L   VT L  +  P
Sbjct: 128 KFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHP 170



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 252 DCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFANY 371
           +C   + +QI  E  AS  Y ++ AYF  D V   GFA +
Sbjct: 90  ECEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKF 129


>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
          Length = 448

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +3

Query: 318 MGAYFSIDTVNRPGFANYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRR 497
           M +  S   +N P  A     L L  A  RPS +T C    +   P PTS+   P    R
Sbjct: 1   MNSLQSFLALNPPATAAALGGLGLGGARLRPSRVTACLATPTPTPPPPTSAPLAPAAAAR 60

Query: 498 GRAAISPRA 524
              + + RA
Sbjct: 61  RELSAASRA 69


>02_05_0448 -
           29100674-29100716,29100821-29100902,29101010-29101130,
           29101481-29101546,29101628-29101735,29102083-29102148,
           29102605-29102633,29102773-29102902
          Length = 214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 237 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 88
           P+I  G+  D  +  C          D KE  PH       RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 189 HSYTVLRQPRHHQG*VAHHGADCYNMMRKQIQEEVAAS 302
           H Y   ++  H Q   A H +  YN  RK +Q E+  S
Sbjct: 712 HEYKKTQEKEHRQKRKADHASRDYNKRRKVLQRELGLS 749


>06_03_1089 - 27521291-27522124
          Length = 277

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 324 PPWLSTGLTRPLPPGXXXXXXXXSLLHGEPLIPDGD 217
           PP   +   RP+PP           +HG  L+P GD
Sbjct: 185 PPTERSADVRPMPPEGHFFIPHPHFMHGHFLVPGGD 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,690,426
Number of Sequences: 37544
Number of extensions: 404147
Number of successful extensions: 1116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)