Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0667
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    29   0.45 
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    29   0.78 
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    28   1.4  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   5.5  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   7.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.6  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 142  ITNMWLYVFFMLSIIYFVPNKLSVKRVFDIKITYK 38
            +TN WL + F L ++Y    KLS+K   + +IT+K
Sbjct: 1116 VTNFWLELVFTLLLVYI---KLSLKGSINSQITFK 1147


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -3

Query: 611 GRILKRVLGQQNRREALTEPTDMLIDXAARXANTNIGHHIGTPSRNL*CSPTCCVSGAHS 432
           GR  KR     +RREA     + + +   R  N  +G     P R + C    C SG H 
Sbjct: 2   GRGGKRTWYNGDRREAKRNRPNSIYNGEGRPENLVVGEK--KPKRKVACLVGYCGSGYHG 59

Query: 431 TRPSPQQKPL 402
            + +P  K +
Sbjct: 60  MQLNPPSKTI 69


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = -1

Query: 298 VDCL*KVTLPRSIILVQNCVYLVSNTINFLNLYKNILKAI*ANTFFKRINNAITNMWLYV 119
           +D L ++    S ++V N +  + N +N    +K       +N   K + +   + WL V
Sbjct: 163 IDHLKEMLSDESSVVVANSLAALMNIVNSSTGFKLTFSREISNKLVKSLTDC--SEWLQV 220

Query: 118 FFMLSIIYFVPNK 80
             + ++I++VP K
Sbjct: 221 AILDALIFYVPQK 233


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 345 SITTDFKSECLGKC*TLTVFRKSHCRGP*FWCKI 244
           +ITT F         T+TVF   +C GP  W  +
Sbjct: 161 AITTVFHISLTVSLLTMTVFLLGYCSGPIIWAPL 194


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 6   VLFFFCQNNFSLYVIFISNTRLTLNLFGTKYIILNIKK 119
           + F F    FS  ++F+    +   LF  KY++LN+ K
Sbjct: 15  ISFTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLNLTK 52


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 573  PRSPDRTHRYVDRXRGKXRQHQYRSPYRHTFQ 478
            P +PD     +DR  GK  Q   ++P+  TF+
Sbjct: 1552 PSNPDGVIVGIDRKSGKPLQSHAKAPFMATFK 1583


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 546 IGGFCQGFSAVLLPQYSLEYPSISYE 623
           I   CQ  SA++LP  +   P + YE
Sbjct: 617 ISSLCQSSSALILPFLNHNLPDVMYE 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,411
Number of Sequences: 5004
Number of extensions: 52563
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)