Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0667
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    30   1.3  
AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical p...    27   8.9  

>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 81  LFGTKYIILNIKKTYNHIFVIALLIRLKNVLAYMAFKIFLY 203
           +F  K ++L I  T+N I+++ +LI L     Y A+K F Y
Sbjct: 250 IFQKKNVVLKI--TFNKIYMVPILIGLYGCALYTAYKSFNY 288


>AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical
           protein Y67H2A.7 protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
 Frame = +3

Query: 432 GVSTGHTTCWRTSKVSGRCADMVTYIGVGGPCRAI-----YQHIGGF-C-QGFSAVLLPQ 590
           G+  GH++ WR S+VS   A+ + +  +G    +I     YQH+ G  C Q FS +  P 
Sbjct: 444 GLVDGHSSQWRNSRVSFHSAETM-FHELGHAMHSILGRTKYQHVAGTRCPQDFSEI--PS 500

Query: 591 YSLEY 605
             +EY
Sbjct: 501 NLMEY 505


>Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical
           protein Y57G11C.32 protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +3

Query: 24  QNNFSLYVIF---ISNTRLTLNLFGTKYIILNIKKTYNHIFVIAL 149
           Q NF++ ++    ++ +RL++N    + ++L ++ TY H+F IAL
Sbjct: 253 QLNFTVKLVSGEGLTASRLSINYSLHRVLLLMLRITYRHLFSIAL 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,303
Number of Sequences: 27780
Number of extensions: 308379
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)