Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0664
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.4
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 4.2
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 5.5
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 7.3
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.6
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 9.6
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 188 YIAAIQGSCLGGGLETAL-ACKYPLL*KTPKQDLDYQKSCWDFCPAVEGHRDYLLSP 355
YI L G + TAL AC L+ + + + +K C + P VEG ++Y SP
Sbjct: 995 YIYPYDQGKLEGLVNTALHACLLVLMSEKGSEPIFSKKICENRFPVVEGLQEYCNSP 1051
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.4
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = -1
Query: 467 PKPGPRGETNRSTIP--NFFALSAFTVLPVRARSKVVGMEVRA--GNLCVPPPPGKSPNM 300
P P P NR P N + S+ P RS G G PPPP +S
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 299 TSGSPNPVLES 267
T P P+ S
Sbjct: 372 TGRQPPPLSSS 382
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 8 NEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKP 187
N + + A + I P G S + + T E VS +K H++ + +S+KP
Sbjct: 552 NPVHATTRFIAQIAILELPSILTTG--YSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKP 609
Query: 188 YIAAIQGSCLGGGLET 235
+ A +G + LET
Sbjct: 610 PMFATKGMKIIAELET 625
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 26 SGIEAAVIISGKPGCFIAGADISM----IENCKTKEEVVSLSKRGHEIFRRIEQSRKPYI 193
S + +I+ G F +G DI I++ K E + ++ + + + +KP +
Sbjct: 98 SNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQE-YRLSHTLATYQKPVV 156
Query: 194 AAIQGSCLGGGLETAL 241
A + G +GGG A+
Sbjct: 157 ALMNGITMGGGSGLAM 172
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 559 DLSTIIFPAAISFAICILQFRGIWLYFPQ 473
DLST+ P+ I +L++ W FP+
Sbjct: 39 DLSTLSAPSFILSGTSLLEYMSYWFEFPE 67
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 177 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 40
D S LLN +L+ L + ++ L P M+H + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -3
Query: 192 IYGFRDCSILLNISCPLL 139
IYG++D ++ + CPL+
Sbjct: 45 IYGYKDLNVTITYECPLM 62
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 329 PPPPGKSPNMTSGSPNPVLESFTAMDIYM 243
PPP P++ S NPV + T D M
Sbjct: 602 PPPESPGPSLQIPSNNPVYTNLTDTDSMM 630
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 566 FFRSINNYFSSSYILCNLYTTV 501
F SI +F +SY C+ YT++
Sbjct: 552 FLESIRPFFGTSYDFCSSYTSL 573
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 338 LCVPPPPGKSPNMTSGSPNPVLES 267
L P PP + P +T+ SPN ++ S
Sbjct: 240 LTPPAPPVELPPVTTTSPNAIIRS 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,380
Number of Sequences: 5004
Number of extensions: 59359
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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