Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0664
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.8  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 97  DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 213
           DRK + K +  + +   + N   N    + +YC N R+L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKL 107


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 569 AFFRSINNYFSSSYILCNLYTTVSRYLAV 483
           AFFR    Y SS  ++C    ++ RY AV
Sbjct: 115 AFFRMFGLYLSSFVLVC---ISMDRYYAV 140


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 97  DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 213
           DRK + K +  + +   + N   N    + +YC N ++L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 97  DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 213
           DRK + K +  + +   + N   N    + +YC N ++L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   IVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 106
           +  +I TN+  + A  I GKP   +  +  S++++
Sbjct: 879 VKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQS 913


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,547
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)