Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0663
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   4.2  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   5.5  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   7.3  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    24   9.6  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    24   9.6  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -2

Query: 433 ITMLYIAEIGTI*NTSLV-G*N--PFLRTIYFGNRXX--LXXXXXXXXXXXFWGIVNPAS 269
           I  +++A+  ++ N SLV G +  PF+ TI+ G R                 W I+ PA 
Sbjct: 202 IMTIFMADTSSMANRSLVLGISYLPFVVTIWIGPRVAQEFYMHSTWRWGIAVWTILIPAC 261

Query: 268 QIMYLNFYAY 239
            I +L  Y+Y
Sbjct: 262 SIPFLAVYSY 271


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 359 PEKGILTN*RSVLYCSDFCNIKHSYVF 439
           P KG+L      +  +DFC   HS +F
Sbjct: 269 PMKGVLGYTEDAVVSTDFCGDNHSSIF 295


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 163 ETYFRKLKYMQNT*LYK*QFPKFLRYTHKNSNT*FVMLGLLSP 291
           ETY++ ++Y++ T   +      L YT   +N  F++ GLL P
Sbjct: 467 ETYWQAVEYVRRTSQDE-GIDYALNYTDPKTNDSFILNGLLVP 508


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 359 PEKGILTN*RSVLYCSDFCNIKHSYVF 439
           P KG+L      +  +DFC   HS +F
Sbjct: 269 PMKGVLGYTEDSVVSTDFCGDNHSSIF 295


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 296 LLGDSKPSITNYVFEFLCV*RKNFGNCYLYNYVFCMYFS 180
           ++ D  PS   Y++ F C+ +  F  C +   +   YF+
Sbjct: 334 IITDHGPSYGLYLYLFFCIYKIKFQKCDMNIVMLTKYFN 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,398
Number of Sequences: 5004
Number of extensions: 23829
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)