Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0663
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    27   4.9  
AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine re...    27   4.9  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    27   6.5  

>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 228 FWELLFI*LCILHVF*FSKICLDIKFHVHINNVLNLFC 115
           F++  F+ L + HV     IC D   H H    +N FC
Sbjct: 66  FFDSSFMKLNVHHVAFILLICYDASIHAHAIITINRFC 103


>AF016420-3|AAB65310.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein13 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 262 MYLNFYAYNVKILGIVIYIIMYFACILV 179
           MY++FY Y+    G+++ IIM    IL+
Sbjct: 80  MYISFYVYSQAAQGVLMLIIMLDLLILI 107


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -2

Query: 274 ASQIMYLNFYAY--NVKILGIVIYIIMYFACILVF 176
           A  I  +N+Y+   N  ++ I +Y +++FACI+++
Sbjct: 3   AHDIQRINYYSNLKNFDLILIGLYGLLFFACIIIY 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,814,827
Number of Sequences: 27780
Number of extensions: 127945
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)