Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0654
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    29   0.48 
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.63 
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   3.4  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   3.4  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   5.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   5.9  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.8  

>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +3

Query: 189 NSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKALEKCMN--LVEFPSMSSELMFFHQ 362
           NS EF  +         K+   L+SKGLT  EIQ+A +   N     +P   +   F  +
Sbjct: 8   NSVEFLREKTVLDAPDVKKIEFLKSKGLTAEEIQEAFKLAKNPLFPSYPRFENTSNFVSR 67

Query: 363 SRSSWF 380
               WF
Sbjct: 68  DWRDWF 73


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 180 FGNNSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKALEKCMNLVEFPSMS 338
           F +   +    PK  K+H++K R  L SKG  D +      +C  +    S S
Sbjct: 3   FKSRKYKIKKHPKDCKLHAKKYRGTLNSKGKNDNDCLIMCMRCRKVKGIDSYS 55


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 255 LRSKGLTDTEIQKALEKCMNLVEFPSMS 338
           L SK +TDTE  + LE C+++++  S++
Sbjct: 501 LSSKKITDTEKNELLETCLSILDSWSLA 528


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = -3

Query: 477 DLRILNVGRSSYKTSNIHKLNFHTSKMEEHDL*TKNSWIGGKTSAQMTSRETQLDSCISL 298
           D+R LN       T N+H       +++E ++     W      A   ++E +L +C  L
Sbjct: 330 DIRRLNEKVEHTYTQNVHNACLREQQIKEDEIRRAQGWFFPDKEALKKAKELRLPNCEEL 389


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 216 KRAKVHSRKQRTILRSKGL 272
           KRAK +SRKQR + RS  L
Sbjct: 25  KRAKENSRKQRELRRSSAL 43


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 476 STKAQDYERMPEEVRKSLEDLNTNVFALK 562
           +TK +DYE +PEEV ++  ++  +   LK
Sbjct: 517 TTKRKDYEELPEEVSETSINIAEHTPVLK 545


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 246 FAFYCAPLHVWVCQEIHCC 190
           +AF  +P  +++  EIHCC
Sbjct: 520 YAFVVSPYPLFISLEIHCC 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,996
Number of Sequences: 5004
Number of extensions: 56276
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)