Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0654
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    32   0.33 
U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    30   1.3  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    30   1.8  
AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical ...    29   3.1  
U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z54284-6|CAA91064.1|  206|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    27   9.5  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    27   9.5  

>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +3

Query: 189 NSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKALEKCMNLVEFPSMSSELMF-FHQS 365
           NS+    KP+   +   ++ T+   K  T + I K LE       +       +F F+QS
Sbjct: 276 NSANIVQKPRNITLTKHRKATVEYQKFWTISRIPKLLEPPKLFKIYLGHGLHCIFNFYQS 335

Query: 366 RSSWFRDHVLPFLMYGSLAYGCYWFYKNCVRHLIFVDQPKRKTTNECLRR 515
           +   FR+    +L    +  GC+  + +C   +  V     KT   C RR
Sbjct: 336 K---FREQ--SYLSTAIVLIGCFNTFHDCDIEIYLVHGKTSKTQKSCARR 380


>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = +3

Query: 303 KCMNLVEFPSMSSELMFFHQSRSSWFRDHVLPFLMYGSLAYGCYWFYKNCVRHLIFVDQP 482
           KC+ L   P++ +  +    +R  W   H         L  GC     N V + IF D+P
Sbjct: 352 KCLALFSAPALVAIFVSDESNRLQWLWVH---------LVLGCLMIITNFVSYFIFTDEP 402

Query: 483 KRKTTNECLRRFGKV 527
              T +E   +  K+
Sbjct: 403 AEWTNSEVTVKLEKI 417


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 141 RNFNRCWGRSTRKFGNNSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQK-------AL 299
           R F+ C    T +  N+S   P +    +VHSRK+R   + +     E+ K       A 
Sbjct: 180 RQFS-CPQSPTSRHRNSSFSPPRRHATREVHSRKRRHDDKKRSTVRPEVSKELTFPVVAT 238

Query: 300 EKCMNLVEF 326
           +KC++L+EF
Sbjct: 239 QKCLSLLEF 247


>AC006655-6|AAF39878.2|  383|Caenorhabditis elegans Hypothetical
           protein H10D18.6 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 303 SLKLSEFQ-YQLDLCYVESFFAFYCAPLHVWVCQEIHCCCYQIF 175
           SLK+S FQ Y  D+ YV    ++      VW   E+H  C + F
Sbjct: 317 SLKMSSFQRYNYDI-YVYKSMSYVIPGALVWQSLEVHSSCRRFF 359


>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 112 TNNITRRMSTETLIAAGDGVRENLVTTAVNFLTNPNVQRCTVESK 246
           T N   ++S ET++ +   + +  VTT V  +TNP   +C  + K
Sbjct: 14  TENFILKLSAETVLFSNAKLGDE-VTTTVLKMTNPTTDKCAFKVK 57


>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 470 RRSTKAQDYERMPEEVRKSLEDLNTNVFALKGELNSLQQN 589
           R   K  D     EE  + +E +   +  LKG+L SLQ++
Sbjct: 256 RSDPKENDENAADEEKNRFVESMKEQIGTLKGDLKSLQES 295


>Z75554-7|CAA99960.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC455.9 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 375 KNSWIGGKTSAQMTSRETQLDSCISLKLSEFQYQLDLCYVESFFAFYCAPLHV 217
           +NS I  K    +      +D C S+ +S +   LD+ Y+  FF F+   L V
Sbjct: 35  QNSPIRKKPEYHLYQIRFFVDICYSIAVSIYYVALDISYLSPFFLFHYKILFV 87


>Z54284-6|CAA91064.1|  206|Caenorhabditis elegans Hypothetical
           protein D2085.7 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = -3

Query: 366 WIGGKTSAQMTSRETQL---DSCISLKLSEFQYQLDLCYVESFFAFYC---APLHVWVCQ 205
           W   KT   +T++++ +   D  +  + ++FQ+   L  +E +F FYC    PL V    
Sbjct: 57  WTLNKTPYGITAKQSAICRFDDQVINRQAQFQFNRKLARLELWFMFYCRNGRPLRVRQIA 116

Query: 204 EI 199
           EI
Sbjct: 117 EI 118


>U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical
           protein B0554.2 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 347 DVFPPIQEFLVQRSCSSIFDVWKF 418
           DV PP Q   +   CSS+  +W +
Sbjct: 259 DVVPPPQTVAINAECSSVDSIWNY 282


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 165 RSTRKFGNNSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKALEK 305
           R+ +K   N SE  +   RA+++ R+Q  I R++G    EI + +EK
Sbjct: 298 RTYQKRSQNQSEMAN---RAEINRRRQEDIDRNEGKQIREISEKIEK 341


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 165 RSTRKFGNNSSEFPDKPKRAKVHSRKQRTILRSKGLTDTEIQKALEK 305
           R+ +K   N SE  +   RA+++ R+Q  I R++G    EI + +EK
Sbjct: 455 RTYQKRSQNQSEMAN---RAEINRRRQEDIDRNEGKQIREISEKIEK 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,043,608
Number of Sequences: 27780
Number of extensions: 304494
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)