Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0652
(470 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 60 1e-11
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 56 2e-10
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 54 5e-10
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 47 1e-07
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 45 3e-07
X97819-1|CAA66399.1| 251|Tribolium castaneum ZEN Tc protein. 23 1.9
AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein. 23 1.9
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 59.7 bits (138), Expect = 1e-11
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
+CR ++C ID+ RN+CQ+CR +KCL MGM+REAVQ R
Sbjct: 121 ACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 160
Score = 54.4 bits (125), Expect = 5e-10
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 304 IDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKCSM 465
++NIC+ + LF V+WA+ +P F L +TDQV LLR W+EL + S SM
Sbjct: 211 VNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSM 264
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 55.6 bits (128), Expect = 2e-10
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +1
Query: 274 PCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 453
P + P ++ ICE AA+L+F V+W R+IP F L ++DQ+ LL W +LFVL A+
Sbjct: 186 PPIFPPTMINPSAICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA 245
Query: 454 K 456
+
Sbjct: 246 Q 246
Score = 50.4 bits (115), Expect = 8e-09
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 21 SCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
SC ID+ HRNQC+ CRL+KC +GM ++AVQ R
Sbjct: 81 SCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHER 114
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 54.4 bits (125), Expect = 5e-10
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = +1
Query: 274 PCVQPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNAS 453
P PT ++ ICE AA+LLF V+W R+IP F L ++DQ+ LL W +LFVL A+
Sbjct: 187 PIFAPT-MINPSAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA 245
Query: 454 K 456
+
Sbjct: 246 Q 246
Score = 50.4 bits (115), Expect = 8e-09
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 21 SCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGR 122
SC ID+ HRNQC+ CRL+KC +GM ++AVQ R
Sbjct: 81 SCIIDKTHRNQCRACRLKKCQNVGMNKDAVQHER 114
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 46.8 bits (106), Expect = 1e-07
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 6 CRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAV 110
C+ +C ID + R +CQ CRL+KCL +GMR E V
Sbjct: 224 CKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECV 258
Score = 29.9 bits (64), Expect = 0.012
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 310 NICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASK 456
+I E+ + VE+A+ +P F +L DQ+ALL+ SE+ + ++
Sbjct: 357 HITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMAR 405
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 45.2 bits (102), Expect = 3e-07
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 6 CRGNRSCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVXXXXXXXXXXXXXFTLGNGD 185
C+ N C I++ +R C+ CRLRKCL +GM + + GR G
Sbjct: 42 CKNNGECVINKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQQAGANM 101
Query: 186 PGAG--LNNHPYLS 221
A L HPYLS
Sbjct: 102 AAAANLLRPHPYLS 115
>X97819-1|CAA66399.1| 251|Tribolium castaneum ZEN Tc protein.
Length = 251
Score = 22.6 bits (46), Expect = 1.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 201 NNHPYLSSYISLLLRAELPRLEIQSMRPTNERHGHRQHLRAR 326
N PY+SS + L E+ + Q +PT + + A+
Sbjct: 58 NAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQ 99
>AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein.
Length = 246
Score = 22.6 bits (46), Expect = 1.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 201 NNHPYLSSYISLLLRAELPRLEIQSMRPTNERHGHRQHLRAR 326
N PY+SS + L E+ + Q +PT + + A+
Sbjct: 49 NAPPYMSSVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSAQ 90
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,381
Number of Sequences: 336
Number of extensions: 2210
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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