Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0652
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   1.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.9  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   2.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   4.4  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    25   7.7  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    25   7.7  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 283  QPTNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELF 438
            +PT  +  +NIC L A+ L   VE+ R    F  + +T     +RLV S+ +
Sbjct: 1213 EPTTNLDEENICSL-AKNLSRIVEFRRKQANFQLIVITHDEQFIRLVNSDAY 1263


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 277  CVQPTNVMGIDNICELAARLLFSAVEW 357
            C+ P N +G + + E+ A   F +V W
Sbjct: 937  CMNPANRLGANGVEEIKAHPFFKSVNW 963


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 347 PSNGRETSPSSPNCKLRTKSPY*GSSGRNCSC*TPLSAPC 466
           P   R+T P   NC+LR       S G  C   T L  PC
Sbjct: 16  PYRSRKTRPCD-NCRLRKSRCVVESIGNPCLLCTQLKIPC 54


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 342  EKQSGSELADVVYAHDVRWLDA 277
            E  SG+ LAD++  H  RW+ +
Sbjct: 1767 EAASGNNLADLIIQHLARWISS 1788


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 214 ISRRTYRCY--C-GRSYPASRYSPCVQPTNVMGID 309
           ++RR  RCY  C  + YP SRY+  V  + +   D
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFD 35


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 214 ISRRTYRCY--C-GRSYPASRYSPCVQPTNVMGID 309
           ++RR  RCY  C  + YP SRY+  V  + +   D
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFD 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,710
Number of Sequences: 5004
Number of extensions: 37569
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)