Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0652
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0244 + 32613914-32614666 30 1.1
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 29 1.4
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 29 1.4
04_03_0584 + 17546945-17547382 28 3.3
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216... 28 4.4
01_06_1012 - 33806190-33807875,33807963-33808331 28 4.4
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 5.8
07_03_0137 + 14101849-14102511 27 5.8
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215... 27 5.8
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 27 7.6
04_03_0641 + 18261332-18262423 27 7.6
>03_06_0244 + 32613914-32614666
Length = 250
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = -3
Query: 468 GHGALRGV*HEQFRPDEPQ*GDLVRNLQFGEEGDVSRPFDGGEKQSGSELADVVYAHDVR 289
G G +RG + RP P G + GEEG + +++ + L + + VR
Sbjct: 104 GLGPIRGAERIRARPSSPDDGGEAKEGWRGEEGSTKKMRSVTLQEAMAGLPEHGDSR-VR 162
Query: 288 WLDAW-TVSRGGVAPPAVAAICTTRD 214
+ DAW + GG PA A T +
Sbjct: 163 YSDAWRRANEGGEGEPAAAVAKETAE 188
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 225 YISLLLRAELPRLEIQSMRPTNERHGHRQHLRARCQTAF 341
Y +RAEL RL ++R ER G L RC+ F
Sbjct: 40 YFHKAIRAELERLHAAAVRLATERSGDVGELERRCRFLF 78
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 50 PVSVLQTKEMSQNGHEKRSCPKRSSASIAAARPGTPWP 163
PVS + T G EK S R+ S PG WP
Sbjct: 336 PVSTVDTAGAPLEGEEKASAANRAPVSGGRRSPGLKWP 373
>04_03_0584 + 17546945-17547382
Length = 145
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 393 NLQFGEEGDVSRPFDGGEKQSGSELADVVYAHDVRWLDAWTVSRGGVAPPAVAA 232
N + G G +GG+ +G L+ V A + A + GG APPAV A
Sbjct: 43 NQRAGRGGGRRGDAEGGDGAAGPHLSGVAGAAGGSTVAATPLDDGGNAPPAVTA 96
>02_01_0321 -
2162015-2162134,2162763-2162846,2162931-2163011,
2163690-2163867,2163946-2164089,2164194-2164240,
2164520-2164576,2165286-2165408,2165496-2165618,
2165959-2166072,2166169-2166176,2166272-2166458,
2174597-2174763,2174924-2175008,2176632-2176820,
2177727-2177918,2178434-2178634
Length = 699
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 337 LFSAVEWARNIPFFPELQVTDQ 402
+ EWA N P FPEL +T Q
Sbjct: 195 ILGVYEWAGNNPIFPELWLTPQ 216
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 334 LLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASKC 459
+LF A A+++ ELQ + L+R+VW E+ ASKC
Sbjct: 598 VLFDACRLAKSLL---ELQPGKRWRLIRVVWVEILCYAASKC 636
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 211 HISRRTYRCYCGRSYPASRYSPCVQPTNVMGIDNICE 321
+I+ +R C YP R C PT + I+N+ E
Sbjct: 109 NITNADWRTNCYEYYPDGRIKRCRGPTKLANIENLPE 145
>07_03_0137 + 14101849-14102511
Length = 220
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 408 GDLVRNLQFGEEGDVSRPFDGGEKQSGSELADVVYAHDVRWLDAWTVSRGGVAPPAVAA 232
G L N + G G +GG+ +G L+ A + A + GG APP V A
Sbjct: 105 GGLQTNQRAGRGGGRRGDAEGGDGAAGPHLSGAAGAAGGGTVAATALDDGGNAPPVVTA 163
>02_01_0319 -
2148788-2148892,2149474-2149557,2149643-2149723,
2150303-2150480,2150811-2150954,2151048-2151094,
2151353-2151409,2151566-2151664,2151867-2151989,
2152083-2152205,2152594-2152707,2152972-2153160,
2153412-2153578,2153904-2153988,2155431-2155628,
2155978-2156175
Length = 663
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 334 LLFSAVEWARNIPFFPELQVTDQ 402
L+ EWA N P FPEL + Q
Sbjct: 132 LMLGVYEWAGNNPIFPELWLAPQ 154
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 260 PRDTVHASNQRXXXXXXXXXXXLPDCFSPPSNGRETSPSSPN 385
P+ +H ++ + LP+ PP N +T+ SSP+
Sbjct: 26 PQPQLHPNHHQPQQPPMTPTTPLPEAAKPPQNPEKTAASSPH 67
>04_03_0641 + 18261332-18262423
Length = 363
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 SCRGNRSCPIDQHHRNQC-QFCRLRKCLKMGMRR 101
SCR PID+ HR C + R+ C + RR
Sbjct: 241 SCRQLALLPIDELHRFSCLEVLRIESCPNLNTRR 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,426
Number of Sequences: 37544
Number of extensions: 334711
Number of successful extensions: 1172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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