Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0651
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.33 
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    28   1.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   2.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   5.4  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   5.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 22/63 (34%), Positives = 25/63 (39%)
 Frame = +2

Query: 329 PDCFSPPSNGRETSPSSPNCKVRTKXPY*GSSGRNCSC*TPLSAPCPSTWAPLLAAAGLH 508
           P    PPSNG  +SP  PN   R   P   +   N +   PL  P     A  LAA    
Sbjct: 253 PPPIPPPSNGTVSSP--PNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310

Query: 509 RPP 517
            PP
Sbjct: 311 PPP 313


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 292 NVMGIDNICELAARLLFSAVEWAR-NIPFFPELQGTDQXALLRVV 423
           N+ G    C++ A+ L S V     NIP    LQGT+Q A   V+
Sbjct: 346 NIFGGIVRCDVIAKGLISVVSALNLNIPIICRLQGTNQGAAKEVI 390


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 277  CVQPTNVMGIDNICELAARLLFSAVEW 357
            C+ P N +G + + E+ A   F +V W
Sbjct: 937  CMNPANRLGANGVEEIKAHPFFKSVNW 963


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 342  EKQSGSELADVVYAHDVRWLDA 277
            E  SG+ LAD++  H  RW+ +
Sbjct: 1767 EAASGNNLADLIIQHLARWISS 1788


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 347 PSNGRETSPSSPNCKVRTKXPY*GSSGRNCSC*TPLSAPCPSTWAPL 487
           P   R+T P   NC++R       S G  C   T L  PC     P+
Sbjct: 16  PYRSRKTRPCD-NCRLRKSRCVVESIGNPCLLCTQLKIPCTYHLPPI 61


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 160 ASSP*ATVTPAPDSTIIHISRRTYRXYCGRSY-PASRYSP 276
           A+SP    TPA DST     + T R   G SY P  ++SP
Sbjct: 675 ANSPAQANTPAADSTKSGTIQPTNRNGEGLSYSPHQQFSP 714


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 326  LPDCFSPPSNGRETSPSSPNCKVRTKXPY*GSSGR-NC---SC*TPLSAPCPSTWAPL 487
            LP  F+P S  +  + +      RT+  Y   SG   C   +C TP++ P P+ W P+
Sbjct: 1088 LPFKFTPESFIKIRNGNVKEEARRTRNAYTQKSGEVECFMETC-TPIAKPAPANWYPV 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,296
Number of Sequences: 5004
Number of extensions: 37955
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)