Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0651
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1012 - 33806190-33807875,33807963-33808331 31 0.77
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 29 1.8
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 7.2
08_02_0588 + 19036509-19039235 27 7.2
03_06_0244 + 32613914-32614666 27 7.2
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 27 7.2
10_08_1058 + 22608852-22609172,22609257-22610651 27 9.5
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 27 9.5
04_03_0584 + 17546945-17547382 27 9.5
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 334 LLFSAVEWARNIPFFPELQGTDQXALLRVVWSELFVLNASQCSMPLHVGPLT 489
+LF A A+++ ELQ + L+RVVW E+ AS+C H L+
Sbjct: 598 VLFDACRLAKSLL---ELQPGKRWRLIRVVWVEILCYAASKCRSNFHAKQLS 646
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 225 YISLXLRAELPRLEIQSMRPTNERHGHRQHLRARCQTAF 341
Y +RAEL RL ++R ER G L RC+ F
Sbjct: 40 YFHKAIRAELERLHAAAVRLATERSGDVGELERRCRFLF 78
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 211 HISRRTYRXYCGRSYPASRYSPCVQPTNVMGIDNICE 321
+I+ +R C YP R C PT + I+N+ E
Sbjct: 109 NITNADWRTNCYEYYPDGRIKRCRGPTKLANIENLPE 145
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 498 AAASKGAHVEGHGALRGV*HE-QFRPDDPQ*GXLVRTLQFGEEGDVSRPFDGGEKQSGSE 322
AA +G EG RG E R D + LVRT+ G ++ GGE+ +G+
Sbjct: 237 AADGRGGSGEGTSRARGRGEEGTARGGDGEMMALVRTVDVAVAGGLATLTHGGERDAGAA 296
Query: 321 LA 316
+A
Sbjct: 297 VA 298
>03_06_0244 + 32613914-32614666
Length = 250
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 468 GHGALRGV*HEQFRPDDPQ*GXLVRTLQFGEEGDVSRPFDGGEKQSGSELADVVYAHDVR 289
G G +RG + RP P G + GEEG + +++ + L + + VR
Sbjct: 104 GLGPIRGAERIRARPSSPDDGGEAKEGWRGEEGSTKKMRSVTLQEAMAGLPEHGDSR-VR 162
Query: 288 WLDAW-TVSRGGVAPPA 241
+ DAW + GG PA
Sbjct: 163 YSDAWRRANEGGEGEPA 179
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 50 PXSVLQTKEMSQNGHEKRSCPKRSSASIAAARPGTPWP 163
P S + T G EK S R+ S PG WP
Sbjct: 336 PVSTVDTAGAPLEGEEKASAANRAPVSGGRRSPGLKWP 373
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -3
Query: 396 RTLQFGEEGDVSRPFDGGEKQSGSELADVVYAHDVRWLDAWTVSRGGVAPPAVXAICTTR 217
RTL +GD D + ++G + + + +RWLD V G V +CT
Sbjct: 270 RTLPPDADGDGLYEVDDDKNKNGGDDEKLAHTEGLRWLDKAAVRVDG---GGVWEVCTVS 326
Query: 216 DMD 208
+++
Sbjct: 327 EVE 329
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 260 PRDTVHASNQRXXXXXXXXXXXLPDCFSPPSNGRETSPSSPN 385
P+ +H ++ + LP+ PP N +T+ SSP+
Sbjct: 26 PQPQLHPNHHQPQQPPMTPTTPLPEAAKPPQNPEKTAASSPH 67
>04_03_0584 + 17546945-17547382
Length = 145
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 381 GEEGDVSRPFDGGEKQSGSELADVVYAHDVRWLDAWTVSRGGVAPPAVXA 232
G GD +GG+ +G L+ V A + A + GG APPAV A
Sbjct: 51 GRRGDA----EGGDGAAGPHLSGVAGAAGGSTVAATPLDDGGNAPPAVTA 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,735
Number of Sequences: 37544
Number of extensions: 347645
Number of successful extensions: 1123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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