Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0650
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    30   0.69 
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    27   6.4  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    27   6.4  
07_03_0072 - 13051145-13052362                                         27   8.5  

>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 218 VNSRVSAYQTS*PSPSKDNISLNVPLDWNRDQLRDPAR 331
           VN+ +  + T+ P PSK+N    VP+D    Q R PAR
Sbjct: 262 VNNFLEIFCTAIP-PSKNNFRARVPVDQGLQQTRTPAR 298


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 370 VVKINPQTQSSVVSRRISQLIAIPIQWYIQRNIVL 266
           V+K NP TQ  ++SR  S L A      ++++++L
Sbjct: 862 VIKANPTTQHQIMSRVFSSLSAFAGYLLLKKDVLL 896


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 258 ALARTIFR*MYHWIGIAIN*EIRRETTEDCVCGLI 362
           ALA+T++  ++ W+   IN  I ++    C+ G++
Sbjct: 399 ALAKTVYSRLFDWLVDKINKSIGQDPNSKCLIGVL 433


>07_03_0072 - 13051145-13052362
          Length = 405

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 281 LNVPLDWNRDQLRDPARNH*GLCLRVNFHNEHGSF 385
           L VPL W R  +R   R      +R+ FH+    F
Sbjct: 236 LRVPLPWRRSTVRASVRFPGDAIMRIGFHSGRRKF 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,624
Number of Sequences: 37544
Number of extensions: 148295
Number of successful extensions: 274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)