Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0649
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.003
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.004
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.004
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.007
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.021
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.028
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.037
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.037
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.048
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 31 0.085
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.15
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 30 0.15
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.20
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.20
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.26
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.26
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.45
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.60
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 0.60
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.60
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 0.60
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 0.60
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 1.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.0
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.8
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 4.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 4.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 5.6
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 25 5.6
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 24 9.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 24 9.7
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 24 9.7
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 24 9.7
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 9.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 9.7
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 24 9.7
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.9 bits (79), Expect = 0.003
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 65 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 244
+M T V+VGGL + ++DL+ F +G++ ++ + G F+++ AE A
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQYSEKSAAEKAI 349
Query: 245 SAM 253
+ M
Sbjct: 350 NTM 352
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.004
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +2
Query: 71 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 232
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.5 bits (78), Expect = 0.004
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDACS 247
R+YVGGL I+ DLE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 248 AMM 256
+ +
Sbjct: 66 SYL 68
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 34.7 bits (76), Expect = 0.007
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDA 241
+YV G +G++ +L EF+ +G L + + FAF+E+E+ ++AEDA
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDA 63
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.1 bits (72), Expect = 0.021
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 250
R+++ L ++DL+ F +G+L V + + NP GFA+I+F +A+DA A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF---HDADDAVRA 380
Query: 251 MMVL 262
+ L
Sbjct: 381 YLEL 384
Score = 33.1 bits (72), Expect = 0.021
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACS 247
GT++ + L K+D++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 248 AM 253
A+
Sbjct: 780 AL 781
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.028
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
++D++ E D KYGK+ + V N G F++FEN AE A + +
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGL 574
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 32.3 bits (70), Expect = 0.037
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
+YV L G + F YG + +W+ L+P A + +E+L A A A+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDAL 55
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.3 bits (70), Expect = 0.037
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
+++ L K+ D+EREF +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.048
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 214
VYVG + + E+L+ F G +N V + + P GFA+IEF
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.1 bits (67), Expect = 0.085
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSA 250
G +YV + + ++D+E F YG++ SV + GF ++ Q+AE+A SA
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSA 815
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.3 bits (65), Expect = 0.15
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAM 253
+++ L I E++ F +YG + + + + G AF+ +EN+Q+A AC +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKL 70
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.3 bits (65), Expect = 0.15
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 83 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED 238
TR++VG + +ED+ F YG++ + +N GF F+E E+ ++A D
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARD 52
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 80 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 253
G R+ V L E + +DL+ K G+ PG +EF ++ +A +++
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSL 154
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.20
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 177 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 73
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.20
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 238
RV+VG L KK ++ F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 239 ACSAM 253
A +
Sbjct: 105 AIETL 109
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.26
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEA 232
M+S T ++V L K++DL F G + V NP G+ F+ F L++A
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Query: 233 EDACSAM 253
+ A +
Sbjct: 60 QRAAKEL 66
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.26
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 238
+YVG L + DL F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 239 ACSAM 253
A +++
Sbjct: 82 AIASL 86
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.45
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 247
+++VGG+ +E+ F+++G++ + ++ P GF F+ +EN E S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.60
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 175
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 0.60
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +2
Query: 125 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDA 241
EDLE F ++GK+ S V + +AFIEF+N + E A
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 0.60
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
V+VG L + + L +EF++YG + V ++ G+ +++FE + A+ A +A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 68 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 232
+S V+VG L ++DL F G + S+ + +P GF ++ F ++ A
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 233 E 235
+
Sbjct: 421 K 421
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 28.3 bits (60), Expect = 0.60
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 241
VYVG L +E + F K G++ + + ++ P GF F+E+ Q+A D+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.3 bits (60), Expect = 0.60
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 282 QSGA*HLSTIIALHASSASCKFS-NSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 106
Q+ A T +SSA+ + +S+ S+ + +S P SNS + S+ +I S
Sbjct: 769 QNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSI 828
Query: 105 RPPTYTRVP 79
+YT +P
Sbjct: 829 ASSSYTSIP 837
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 253
+YVG L G ++ + F ++G + + ++ N +AFIEFE+L A M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAE 235
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAK 636
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAM 253
V+VG L + + L F +G++ SV + +AF+EF+ ++A++A M
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENM 66
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 122 KEDLEREFDKYGKLNSVWVAL 184
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 86 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 250
++Y+ L + ++ + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 251 M 253
+
Sbjct: 371 L 371
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -1
Query: 261 STIIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 106
ST +L +S++S + S S + SA T S YLS+S SS PS+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 89 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 241
+YVG L + + L F+ G + S+ V + G+A++ F N+++ E A
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 242 THLPPPASSQIL*KRNLGDLVLPKLSLVF 156
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 5.6
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 113 GIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMMVLRC*APL*K 286
GI +++ D G SVW A+ +I +EN + AM C PL K
Sbjct: 262 GISAQNMFEFSDWVGGRYSVWSAIGLSVALYIGYENFEAFLSGAHAMDEYFCSTPLEK 319
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 222 KFSNSMKAKPGGFSATQTEFSFPY 151
KF++S K F+ T+TE S PY
Sbjct: 280 KFNSSFKTSNDFFTFTKTEESSPY 303
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 65 TMSSGGTRVYVGGLVEGIKKE 127
TM+ GGTRV GG+ I +
Sbjct: 785 TMTGGGTRVKKGGMSSAITSD 805
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 96 SAVSSRESRRKISNASSINMEN*TQ 170
SA S R ISN SS+N+ N T+
Sbjct: 147 SAKSLRSCNISISNCSSVNLHNATK 171
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 74 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEF 214
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 216 SNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTR 85
S S++ + G A +TE Y N +S +P PP R
Sbjct: 2051 SGSLRRQKQGLMAYETESFRDYSPNEEIDASAKLPMDMPPVRVR 2094
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 9.7
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 246 LHASSASCKFSNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSF 121
L A SA +F S KAK + + S Y NSRSRSSF
Sbjct: 1590 LRARSAKQRFPVSQWKAKLEALTDGCIKCSQKYGRNSRSRSSF 1632
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 92 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 190
Y G LV+G +K +E D +LNS+ ++P
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSP 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,976
Number of Sequences: 5004
Number of extensions: 26456
Number of successful extensions: 132
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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