Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0638
         (367 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   1.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   3.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   9.1  

>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 275 PDPQIPHRTRNRH 313
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 280 VRIPLLLCAHLLHKSPSVPYRPSRPDG 200
           +++P    AH    SP++P+  +R DG
Sbjct: 117 MQLPHPAAAHSALLSPAMPHNLTRHDG 143


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 148 AGDDAPRAVFPSIVGRPRHQGVMVG 222
           AG  +PR    +   RP HQ    G
Sbjct: 62  AGFPSPRGALGAYPFRPMHQNSYTG 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,533
Number of Sequences: 336
Number of extensions: 1640
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)