Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0638
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 117 7e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 63 1e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 50 1e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 9e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 39 2e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 36 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.005
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.13
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.30
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 1.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 1.6
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 4.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 117 bits (281), Expect = 7e-28
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+EE+AALV+DNGSGMC AGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDE ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 81.0 bits (191), Expect = 5e-17
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIV NWDDMEKI HHTFYNEL
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNEL 94
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.3 bits (147), Expect = 1e-11
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +1
Query: 106 LVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
+ +DNGSG AGFAGDD P+ +FP+ VGR +H+ VM QKD +VG E
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSE 61
Score = 41.5 bits (93), Expect = 4e-05
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNE 362
AQ+ RG+L ++ PIE GI+ NW DME+I + + ++
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQ 97
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 50.0 bits (114), Expect = 1e-07
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 EVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEHRA 264
E A +V+DNG+G G+A D+ PR FPSIVGRP R + + KD VGDE A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 38.7 bits (86), Expect = 3e-04
Identities = 13/37 (35%), Positives = 29/37 (78%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
A++ R +L +KYP+E+GI+ ++++M ++ +TF+ +L
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKL 94
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 40.3 bits (90), Expect = 9e-05
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 106 LVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 255
+++DNG+G G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 33.5 bits (73), Expect = 0.010
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 279 TLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
+L YPI HG + NWD ME+ + + L
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYL 117
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 39.1 bits (87), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVG 192
+EV+A+V+D GS GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.9 bits (79), Expect = 0.002
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
EE+ +LV+D GS G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 34.7 bits (76), Expect = 0.005
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 106 LVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPR 201
LV+DNGS AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 31.5 bits (68), Expect = 0.042
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKILHHTF 353
P E +++NWD ME++L +TF
Sbjct: 86 PFERNVISNWDLMEQVLDYTF 106
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.13
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 248 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 87
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.30
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -3
Query: 323 IPVXDDSVFDGVFEGQDTSFALCSSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 144
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 143 PALHIP 126
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 1.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 251 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 135
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 151 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 255
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 250 LLHKSPSVPYRPSRPDGGAFXRSRGT 173
L+ K+PS PY SRP A S T
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPT 334
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 150 CETGXAHTGAIVYYQRGNFFVAHLELVFN 64
C HT +V++Q NF + ELV N
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNN 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,205
Number of Sequences: 5004
Number of extensions: 27234
Number of successful extensions: 87
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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