Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0638
(367 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 126 5e-30
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 126 5e-30
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 126 5e-30
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 126 5e-30
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 126 5e-30
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 126 5e-30
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 126 5e-30
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 126 5e-30
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 125 1e-29
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 125 1e-29
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 125 1e-29
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 123 3e-29
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 120 4e-28
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 89 7e-19
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 83 6e-17
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 52 1e-07
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 35 0.016
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 32 0.11
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 29 1.0
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 29 1.0
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 27 3.1
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 27 3.1
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 27 3.1
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 27 3.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 9.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 9.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 9.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 9.5
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 26 9.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 26 9.5
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKI 338
AQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 126 bits (304), Expect = 5e-30
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD+EVAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKI 338
AQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 125 bits (301), Expect = 1e-29
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 125 bits (301), Expect = 1e-29
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 64.1 bits (149), Expect = 3e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKI 338
AQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 125 bits (301), Expect = 1e-29
Identities = 56/62 (90%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDM 329
AQSKRGILTLKYPIEHGIVTNWDDM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 123 bits (297), Expect = 3e-29
Identities = 54/62 (87%), Positives = 60/62 (96%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHR 261
MCD++VAAL++DNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE +
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 262 AK 267
+K
Sbjct: 61 SK 62
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 95
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 120 bits (288), Expect = 4e-28
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +1
Query: 88 DEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
+EE+AALVVDNGSGMC AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 94
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 89.4 bits (212), Expect = 7e-19
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +1
Query: 139 AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEHRAK 267
AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE ++K
Sbjct: 6 AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 48
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 45 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 81
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 83.0 bits (196), Expect = 6e-17
Identities = 36/37 (97%), Positives = 36/37 (97%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
AQSKRGILTLKYPIEHGIVTNWDDMEKI HHTFYNEL
Sbjct: 15 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNEL 51
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 214 MVGMGQKDSYVGDEHRAK 267
MVGMGQKDSYVGDE ++K
Sbjct: 1 MVGMGQKDSYVGDEAQSK 18
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 52.4 bits (120), Expect = 1e-07
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 106 LVVDNGSGMCXAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVG 249
+V+DNGSG+ AGFAG+ P+ F + VGRP++ VM G D ++G
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIG 58
Score = 50.8 bits (116), Expect = 3e-07
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +3
Query: 255 AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTF 353
A+S RG+ +++YP+EHGIV NW DMEKI + F
Sbjct: 61 AESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIF 93
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 44.8 bits (101), Expect = 2e-05
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 106 LVVDNGSGMCXAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 255
+VVDNG+G G+AG + P +FPS+VGRP R + + KD VG+E
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEE 60
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 210 RDGRYGTEGLLCRR*AQSKRGILTLKYPIEHGIVTNWDDMEKILHHTF 353
R G + L+ R +L + YP+++GIV NWDDM + HTF
Sbjct: 46 RVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTF 93
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 35.1 bits (77), Expect = 0.016
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 279 TLKYPIEHGIVTNWDDMEKILHHTFYNEL 365
T+KYPI HGIV +WD ME+ + L
Sbjct: 80 TVKYPIRHGIVEDWDLMERYWEQCIFKYL 108
Score = 34.3 bits (75), Expect = 0.027
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 82 MCDEEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIV 189
M ++ A V+DNG+G G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 91 EEVAALVVDNGSGMCXAGFAGDDAPRAVFPSIV 189
+EV+ LV D GS GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
Score = 25.8 bits (54), Expect = 9.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +3
Query: 294 IEHGIVTNWDDMEKILHHTFYNEL 365
++ G++ +W+ EKI+ H++ N L
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENIL 117
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKILHHTF 353
PIE G V NWD ++I TF
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 291 PIEHGIVTNWDDMEKILHHTF 353
PIE G V NWD ++I TF
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF 82
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 186 RXKAPPSGRDGRYGTEGLLCRR*AQSKRG 272
R KA +GRDGR G EG R Q +RG
Sbjct: 216 RGKAGHTGRDGRPGLEGTPGTRGVQGERG 244
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 161 ASSPAKPALHIPEPLSTTNAATSS 90
+SSPA P++ P P +T++ +TSS
Sbjct: 652 SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 161 ASSPAKPALHIPEPLSTTNAATSS 90
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 161 ASSPAKPALHIPEPLSTTNAATSS 90
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 161 ASSPAKPALHIPEPLSTTNAATSS 90
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 197 GLPTIEGNTARGASSPAKPALHIP 126
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 197 GLPTIEGNTARGASSPAKPALHIP 126
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 197 GLPTIEGNTARGASSPAKPALHIP 126
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 197 GLPTIEGNTARGASSPAKPALHIP 126
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 292 GYLRVRIPLLLCAHLLHKSPSVPYRPSRPDGGAF 191
G + +++P L AHLL + P P P+G +F
Sbjct: 695 GEIFLKLPEL--AHLLSSQSTAPLHPKVPEGNSF 726
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 139 AGFAGDDAPRAVFPSIVGRPRHQG 210
A + G D P+A F I+G ++G
Sbjct: 45 ASYLGHDTPQATFREIIGNKEYRG 68
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = -3
Query: 272 TSFALCSSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATS 93
T++A SS T + P PT P G PT A+SP + +P+S++ ++TS
Sbjct: 232 TAYAAPSS-TASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSS----QPVSSSTSSTS 286
Query: 92 S 90
S
Sbjct: 287 S 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,300,908
Number of Sequences: 27780
Number of extensions: 161834
Number of successful extensions: 513
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -